Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc306.2 Carica papaya HOM05D001473 ORTHO05D003934 4.6e-199 698.0 426 100.0
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 5.1e-89 332.4 369 54.5
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 7.3e-88 328.6 369 54.7
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.1e-82 310.5 350 53.1
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 4.6e-82 309.3 337 53.7
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-81 307.8 337 53.4
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 3.0e-81 306.6 331 54.7
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 8.7e-81 305.1 332 54.8
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.5e-80 304.3 347 53.0
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 1.5e-80 304.3 343 53.6
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.9e-80 303.9 289 59.5
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 4.3e-80 302.8 287 60.6
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.2e-79 301.2 298 58.7
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.2e-79 301.2 298 58.7
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.1e-79 300.4 298 58.4
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.7e-79 299.3 354 52.8
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 6.2e-79 298.9 354 52.5
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 8.1e-79 298.5 325 54.8
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 8.1e-79 298.5 334 55.1
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.4e-78 297.7 326 55.2
GSVIVG01023526001 Vitis vinifera HOM05D001473 ORTHO05D003934 9.0e-78 295.0 198 75.3
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 1.2e-77 294.7 329 53.2
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.0e-77 293.9 254 62.2
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 2.6e-77 293.5 286 55.6
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 5.8e-77 292.4 358 50.6
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 1.7e-76 290.8 359 50.7
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 2.9e-76 290.0 365 50.7
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 8.4e-76 288.5 343 53.1
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 8.4e-76 288.5 355 51.5
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 9.3e-75 285.0 352 48.6
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 2.1e-74 283.9 198 71.2
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 1.7e-73 280.8 277 58.5
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 2.3e-73 280.4 318 54.7
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 3.0e-73 280.0 372 47.8
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 6.6e-73 278.9 320 53.4
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 6.6e-73 278.9 353 47.9
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 3.3e-72 276.6 206 68.0
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 7.3e-72 275.4 202 69.3
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 1.3e-71 274.6 254 59.4
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.6e-71 274.2 198 70.2
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.6e-71 274.2 256 59.0
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 2.1e-71 273.9 361 49.3
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 4.8e-71 272.7 286 56.3
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.1e-70 271.6 227 63.4
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.4e-70 271.2 227 63.9
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 2.4e-70 270.4 279 54.5
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 4.0e-70 269.6 324 48.5
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 4.0e-70 269.6 290 52.4
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 5.3e-70 269.2 198 70.2
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.2e-69 268.1 205 67.3
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 1.5e-69 267.7 222 63.5
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 3.4e-69 266.5 371 45.6
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 9.9e-69 265.0 349 47.3
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 6.4e-68 262.3 355 46.5
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.1e-67 261.5 242 59.9
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 1.9e-67 260.8 362 46.7
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.9e-67 260.8 343 46.4
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 4.2e-67 259.6 263 54.0
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 5.4e-67 259.2 342 47.7
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 7.1e-67 258.8 341 47.8
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 2.7e-66 256.9 204 64.7
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 2.7e-66 256.9 257 58.0
ClCG06G009590 Citrullus lanatus HOM05D001473 ORTHO05D003934 3.5e-66 256.5 367 46.3
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 4.6e-66 256.1 315 50.5
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 4.6e-66 256.1 261 54.0
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 7.9e-66 255.4 306 50.0
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 7.9e-66 255.4 263 53.6
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 1.0e-65 255.0 334 48.2
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 1.3e-65 254.6 196 65.3
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 3.0e-65 253.4 266 51.9
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.3e-64 250.0 311 48.9
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 7.4e-64 248.8 261 51.7
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.3e-63 248.1 267 53.9
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 2.8e-63 246.9 325 46.8
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 3.7e-63 246.5 249 57.0
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 4.8e-63 246.1 314 47.5
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 4.8e-63 246.1 356 44.4
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 6.2e-63 245.7 192 64.6
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 8.1e-63 245.4 348 44.0
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 1.1e-62 245.0 320 46.9
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 1.1e-62 245.0 320 46.9
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.1e-62 245.0 194 64.4
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.8e-62 244.2 325 46.8
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 1.8e-62 244.2 338 46.4
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 2.4e-62 243.8 335 46.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.1e-62 243.4 325 46.8
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 4.5e-61 239.6 362 45.3
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 4.5e-61 239.6 223 57.8
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 1.0e-60 238.4 208 58.2
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.0e-60 238.4 184 65.2
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 1.3e-60 238.0 208 58.2
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.3e-60 238.0 208 57.7
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 2.9e-60 236.9 209 58.4
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 3.8e-60 236.5 348 46.8
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 3.8e-60 236.5 219 57.5
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 4.9e-60 236.1 295 46.4
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 6.4e-60 235.7 362 43.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-59 233.8 361 42.9
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 3.2e-59 233.4 322 44.4
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 9.3e-59 231.9 205 59.5
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.6e-58 231.1 361 42.4
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.6e-58 231.1 208 57.7
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 7.9e-58 228.8 208 56.2
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 1.3e-57 228.0 356 43.5
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.1e-56 224.9 208 57.2
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 1.5e-56 224.6 273 47.6
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 1.9e-56 224.2 193 59.1
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 4.3e-56 223.0 181 61.9
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 5.7e-56 222.6 239 52.3
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 9.6e-56 221.9 341 43.4
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 2.1e-55 220.7 359 40.9
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 3.7e-55 219.9 208 56.2
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 8.2e-55 218.8 270 48.5
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 8.2e-55 218.8 209 55.0
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 8.2e-55 218.8 209 55.0
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 4.0e-54 216.5 220 53.2
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 4.0e-54 216.5 220 53.2
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 5.3e-54 216.1 193 57.5
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 1.5e-53 214.5 223 53.4
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 1.5e-53 214.5 263 45.2
HPP92_023312 Vanilla planifolia HOM05D001473 ORTHO05D003934 4.5e-53 213.0 279 48.7
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 7.6e-53 212.2 279 48.4
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.0e-52 211.8 203 53.7
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.0e-52 211.8 203 53.7
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 2.5e-51 207.2 217 53.5
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 2.3e-49 200.7 188 55.9
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 6.7e-49 199.1 215 52.6
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 1.6e-47 194.5 189 53.4
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 2.4e-46 190.7 188 53.7
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 1.3e-39 168.3 180 52.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-39 167.5 510 30.2
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 3.1e-38 163.7 171 49.1
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 2.0e-37 161.0 209 44.0
Sabra19G0030800 Salix brachista HOM05D001473 ORTHO05D019080 1.4e-30 138.3 216 46.3
Nitab4.5_0018899g0010 Nicotiana tabacum HOM05D001473 ORTHO05D003934 2.4e-30 137.5 157 52.9
CsaV3_1G045330 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.5e-29 134.8 95 72.6
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 7.7e-29 132.5 215 36.7
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.5e-27 128.3 187 39.0
arahy.Tifrunner.gnm1.ann1.0270XD Arachis hypogaea HOM05D001473 ORTHO05D003934 9.4e-27 125.6 90 66.7
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 9.4e-27 125.6 187 38.0
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 7.4e-24 115.9 172 43.6
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 4.5e-21 106.7 179 35.8
Sabra19G0030700 Salix brachista HOM05D001473 ORTHO05D019080 2.2e-20 104.4 311 33.8
QL10p043041 Quercus lobata HOM05D001473 ORTHO05D019080 1.1e-19 102.1 105 58.1
FvH4_3g19200 Fragaria vesca HOM05D001473 ORTHO05D003934 2.1e-18 97.8 107 51.4
CsaV3_1G045320 Cucumis sativus L. HOM05D001473 ORTHO05D019080 1.4e-17 95.1 207 33.3
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 2.6e-16 90.9 181 34.3
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 8.3e-15 85.9 97 48.5
SMO196G0150 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.0e-12 79.0 141 34.8
FAN11G3850 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.2e-11 73.9 90 48.9
BcaB06g27306 Brassica carinata HOM05D001473 ORTHO05D003934 2.1e-10 71.2 81 44.4


User provided reference genes

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