Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.264 Carica papaya HOM05D004403 ORTHO05D006164 0.0e+00 1596.3 792 100.0
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 0.0e+00 1248.0 783 78.4
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 0.0e+00 1241.9 783 78.8
Atru.chr1.628 Acer truncatum HOM05D004403 ORTHO05D006164 0.0e+00 1234.9 786 78.4
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 0.0e+00 1233.0 783 78.0
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 0.0e+00 1231.1 781 78.6
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 0.0e+00 1228.4 783 77.8
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 0.0e+00 1226.8 783 77.8
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 0.0e+00 1224.5 783 77.3
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 0.0e+00 1223.4 784 78.1
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 0.0e+00 1219.5 789 77.9
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 0.0e+00 1216.8 783 77.1
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 0.0e+00 1213.7 780 76.7
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 0.0e+00 1209.9 783 77.1
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 0.0e+00 1199.5 783 76.5
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 0.0e+00 1196.8 785 76.4
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 0.0e+00 1191.0 785 76.2
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 0.0e+00 1190.6 779 76.5
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 0.0e+00 1187.6 788 75.4
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 0.0e+00 1186.8 788 75.3
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 0.0e+00 1186.0 789 75.4
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 0.0e+00 1182.9 785 75.7
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 0.0e+00 1181.8 788 75.0
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 0.0e+00 1177.9 783 75.1
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 0.0e+00 1172.9 785 75.0
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 0.0e+00 1172.9 785 75.0
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1172.9 777 74.6
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1169.1 780 74.4
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 0.0e+00 1168.7 785 75.0
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1168.7 777 74.3
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1167.9 777 74.1
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 0.0e+00 1167.5 782 74.6
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 0.0e+00 1167.1 777 74.1
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 0.0e+00 1166.0 783 73.2
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1165.2 777 74.0
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1164.8 782 74.2
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 0.0e+00 1163.7 783 74.3
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1162.1 777 73.6
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 0.0e+00 1161.4 783 74.6
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 0.0e+00 1159.4 785 74.1
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 0.0e+00 1159.1 785 74.0
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 0.0e+00 1159.1 785 74.0
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 0.0e+00 1159.1 778 74.6
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 0.0e+00 1157.9 796 72.9
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1157.1 777 73.5
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 0.0e+00 1156.4 783 73.7
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 0.0e+00 1154.4 783 73.7
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 0.0e+00 1152.5 790 73.0
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 0.0e+00 1150.6 783 73.9
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 0.0e+00 1147.9 767 73.9
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 0.0e+00 1145.6 783 72.9
Phvul.004G126600 Phaseolus vulgaris HOM05D004403 ORTHO05D006164 0.0e+00 1144.4 783 73.3
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 0.0e+00 1144.4 781 73.5
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 0.0e+00 1144.0 782 72.8
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 0.0e+00 1140.6 779 73.2
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 0.0e+00 1136.7 782 72.8
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 0.0e+00 1135.6 785 72.0
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 0.0e+00 1129.8 785 71.8
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1128.6 777 73.1
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 0.0e+00 1126.7 783 70.2
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 0.0e+00 1125.5 783 72.0
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 0.0e+00 1125.2 783 70.2
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 0.0e+00 1123.6 781 71.4
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 0.0e+00 1120.9 814 69.9
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 0.0e+00 1119.4 777 71.2
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 0.0e+00 1112.4 900 65.6
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 0.0e+00 1101.7 816 68.6
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 0.0e+00 1092.0 785 70.2
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 0.0e+00 1090.9 881 64.0
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 0.0e+00 1090.5 785 70.1
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 0.0e+00 1089.7 783 69.3
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 0.0e+00 1089.7 778 70.6
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 0.0e+00 1088.2 782 69.2
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 0.0e+00 1085.1 785 69.3
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 0.0e+00 1078.5 784 68.4
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 0.0e+00 1075.5 783 68.5
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 2.2e-311 1072.0 777 69.2
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 3.1e-310 1068.1 783 68.3
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 7.0e-310 1067.0 781 69.9
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 6.5e-308 1060.4 788 69.3
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 8.5e-308 1060.1 992 58.4
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 9.4e-307 1056.6 779 68.9
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 4.7e-306 1054.3 777 69.2
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 1.0e-305 1053.1 781 67.0
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 8.8e-305 1050.0 782 68.9
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 1.6e-301 1039.3 802 65.5
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 8.9e-297 1023.5 781 67.1
Dinv22934 Davidia involucrata HOM05D004403 ORTHO05D006164 2.2e-287 992.3 671 74.4
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 6.6e-276 954.1 774 62.1
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 4.7e-266 921.4 782 61.4
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 1.3e-263 913.3 605 73.4
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 2.1e-250 869.4 707 63.8
Psat1g115160 Pisum sativum HOM05D004403 ORTHO05D006164 3.0e-236 822.4 587 70.5
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 1.0e-215 754.2 638 61.6
ClCG09G013380 Citrullus lanatus HOM05D004403 ORTHO05D006164 4.4e-211 738.8 541 68.9
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 7.0e-209 731.5 793 49.9
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 1.4e-204 717.2 796 49.0
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 9.1e-201 704.5 785 49.2
COL.COLO4_14184 Corchorus olitorius HOM05D004403 ORTHO05D006164 1.0e-196 691.0 501 70.3
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 2.6e-187 659.8 791 46.4
TAR375G1017 Trochodendron aralioides HOM05D004403 ORTHO05D006164 3.6e-173 612.8 381 78.2
TAR375G0129 Trochodendron aralioides HOM05D004403 ORTHO05D006164 2.7e-168 596.7 382 77.2
CARHR264430 Cardamine hirsuta HOM05D004403 ORTHO05D006164 1.4e-161 574.3 397 72.3
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 3.3e-158 563.1 1003 35.1
CARHR264420 Cardamine hirsuta HOM05D004403 ORTHO05D006164 6.2e-125 452.6 294 78.6
HPP92_003527 Vanilla planifolia HOM05D004403 ORTHO05D006164 5.1e-103 379.8 256 73.4
HPP92_003526 Vanilla planifolia HOM05D004403 ORTHO05D006164 2.8e-101 374.0 392 53.1
Thecc.05G208700 Theobroma cacao HOM05D004403 ORTHO05D037589 3.4e-99 367.1 394 51.5
CDE12G0834 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 5.9e-99 366.3 336 59.2
Psat1g115120 Pisum sativum HOM05D004403 ORTHO05D006164 5.5e-89 333.2 192 82.8
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 8.0e-88 329.3 798 31.6
Thecc.05G209000 Theobroma cacao HOM05D004403 ORTHO05D006164 4.8e-77 293.5 266 58.6
CDE12G0406 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 4.1e-76 290.4 265 58.1
COL.COLO4_14185 Corchorus olitorius HOM05D004403 ORTHO05D006164 8.9e-71 272.7 180 78.3
ClCG09G013390 Citrullus lanatus HOM05D004403 ORTHO05D006164 1.7e-66 258.5 180 73.9
CDE12G0311 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 7.3e-65 253.1 160 71.9
TPR.G11029 Trifolium pratense HOM05D004403 ORTHO05D006164 6.8e-63 246.5 180 72.2
arahy.Tifrunner.gnm1.ann1.Y8CXQ2 Arachis hypogaea HOM05D004403 ORTHO05D006164 7.3e-57 226.5 210 61.0
CDE12G0426 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 3.6e-56 224.2 168 70.8
HanXRQChr02g0041381 Helianthus annuus HOM05D004403 ORTHO05D006164 8.0e-56 223.0 222 57.7
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 3.4e-54 217.6 180 63.3
SEGI_37725 Sequoiadendron giganteum HOM05D004403 ORTHO05D037533 3.5e-51 207.6 146 67.1
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 7.3e-41 173.3 839 22.8
CARHR264330 Cardamine hirsuta HOM05D004403 ORTHO05D006164 7.8e-35 153.3 125 64.8
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 1.3e-34 152.5 741 23.2
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 3.6e-32 144.4 112 69.6
SEGI_01534 Sequoiadendron giganteum HOM05D004403 ORTHO05D037589 1.3e-29 136.0 77 74.0
SEGI_35082 Sequoiadendron giganteum HOM05D004403 ORTHO05D037589 1.3e-29 136.0 77 74.0
RcHm_v2.0_Chr7g0227531 Rosa chinensis HOM05D004403 ORTHO05D031317 4.3e-25 120.9 71 77.5
arahy.Tifrunner.gnm1.ann1.5J7MDZ Arachis hypogaea HOM05D004403 ORTHO05D016646 1.1e-20 106.3 93 61.3
RcHm_v2.0_Chr6g0293481 Rosa chinensis HOM05D004403 ORTHO05D006164 8.7e-18 96.7 61 73.8
Lsat_1_v5_gn_4_141020 Lactuca sativa HOM05D004403 ORTHO05D048380 5.3e-15 87.4 59 62.7
AL8G19390 Arabidopsis lyrata HOM05D018953 ORTHO05D031317 3.8e-13 81.3 49 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4774 Anthoceros agrestis HOM05D003609 ORTHO05D004185 8.2e-08 63.5 173 29.5
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 1.1e-07 63.2 161 29.2
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 1.1e-07 63.2 217 28.6
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 4.0e-07 61.2 158 28.5
PRCOL_00006815 Prasinoderma coloniale HOM05D003609 ORTHO05D004185 4.0e-07 61.2 313 24.0
MBI18_g10584_MAGBIO Magnolia biondii HOM05D003609 ORTHO05D004185 5.3e-07 60.8 222 27.5
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 1.5e-06 59.3 166 26.5
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 1.5e-06 59.3 170 28.2
AUR62029604 Chenopodium quinoa HOM05D001659 ORTHO05D001659 2.0e-06 58.9 29 86.2
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 2.0e-06 58.9 177 27.7
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 2.6e-06 58.5 177 26.6
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 2.6e-06 58.5 112 32.1
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 3.4e-06 58.2 160 26.9
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 4.5e-06 57.8 167 28.1
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 4.5e-06 57.8 187 27.3
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.5e-06 57.8 135 30.4
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 5.8e-06 57.4 136 30.9
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 5.8e-06 57.4 196 24.0
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 5.8e-06 57.4 187 27.3
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 5.8e-06 57.4 176 26.1
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 7.6e-06 57.0 130 31.5
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 1.0e-05 56.6 112 31.2
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 1.0e-05 56.6 158 27.8
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 1.0e-05 56.6 199 26.6
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 1.0e-05 56.6 192 28.6
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 1.0e-05 56.6 187 27.3


User provided reference genes

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