Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 3.8e-158 561.6 317 100.0
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.3e-115 419.5 323 72.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.0e-114 416.4 287 74.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 7.5e-114 414.5 323 70.6
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 6.4e-113 411.4 314 71.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.4e-112 410.2 319 69.0
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.4e-112 409.5 320 68.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.6e-111 406.8 272 77.6
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 5.6e-109 398.3 270 74.4
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 3.6e-108 395.6 264 75.4
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 2.3e-107 392.9 266 77.4
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 5.2e-107 391.7 273 75.8
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 6.8e-107 391.3 271 74.5
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.0e-106 389.8 257 78.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.6e-106 389.4 279 72.8
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.4e-106 389.0 266 74.8
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.3e-105 387.1 267 75.7
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.7e-105 386.7 322 66.1
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 3.8e-105 385.6 257 77.8
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.8e-105 385.6 275 73.8
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 8.4e-105 384.4 323 68.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 8.4e-105 384.4 277 72.9
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 3.2e-104 382.5 285 69.5
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 5.4e-104 381.7 319 64.3
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.1e-103 379.8 285 70.2
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.7e-103 379.4 318 64.5
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 3.5e-103 379.0 267 74.2
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 7.8e-103 377.9 268 73.5
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 7.8e-103 377.9 283 69.3
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 7.8e-103 377.9 236 78.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.3e-102 377.1 267 74.2
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 3.9e-102 375.6 243 79.4
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 8.6e-102 374.4 244 78.3
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.9e-101 373.2 320 64.1
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.5e-101 372.9 248 77.0
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 4.3e-101 372.1 288 67.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 4.3e-101 372.1 289 68.2
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 9.6e-101 370.9 275 71.6
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 2.1e-100 369.8 246 76.4
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.6e-100 369.0 287 67.2
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 4.7e-100 368.6 246 76.0
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 8.1e-100 367.9 265 70.2
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.4e-99 367.1 291 67.4
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.0e-99 365.5 285 67.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 5.2e-99 365.2 279 69.2
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.5e-98 363.6 305 63.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 1.5e-98 363.6 319 63.0
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.0e-98 363.2 317 62.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 2.0e-98 363.2 319 62.4
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 3.4e-98 362.5 242 74.8
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 7.6e-98 361.3 281 72.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 9.9e-98 360.9 318 62.6
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-97 360.1 317 60.9
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.7e-97 360.1 272 68.0
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 8.4e-97 357.8 272 66.9
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-96 357.5 246 72.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.9e-96 356.7 246 72.4
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.4e-96 356.3 274 65.7
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.2e-96 355.9 247 76.5
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.4e-96 355.1 319 60.8
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 7.1e-96 354.8 271 68.6
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.3e-96 354.4 270 70.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.5e-95 352.4 241 74.7
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 4.6e-95 352.1 237 71.7
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.6e-95 352.1 261 70.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.0e-95 351.7 277 66.4
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 6.0e-95 351.7 259 68.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 6.0e-95 351.7 289 64.0
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.0e-94 350.9 272 65.4
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.3e-94 350.5 264 68.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.3e-94 350.5 262 67.9
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.3e-94 349.7 243 70.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.3e-94 349.7 278 66.2
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 3.0e-94 349.4 278 66.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 5.1e-94 348.6 269 69.9
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 8.7e-94 347.8 281 67.6
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.1e-93 347.4 262 67.9
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.5e-93 347.1 278 65.8
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.3e-93 345.5 266 68.0
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.6e-93 344.4 276 64.9
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 9.6e-93 344.4 234 72.2
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.6e-92 343.6 278 66.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-92 343.6 268 66.4
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 8.1e-92 341.3 269 65.1
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 4.0e-91 339.0 317 60.9
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 5.3e-91 338.6 240 72.5
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.5e-90 335.5 227 72.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 9.9e-90 334.3 220 77.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.2e-89 333.2 279 64.9
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.2e-88 329.3 266 65.4
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.2e-87 327.4 244 70.1
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.6e-87 327.0 249 66.3
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.9e-86 322.4 253 68.4
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.8e-84 315.5 274 62.0
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 6.2e-84 315.1 279 61.3
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 7.6e-82 308.1 222 68.0
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 8.4e-81 304.7 215 70.7
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-80 303.9 235 68.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.9e-77 293.5 290 56.6
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.1e-76 290.0 211 68.2
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 3.8e-73 279.3 261 55.6
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 9.3e-72 274.6 232 65.1
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-71 273.9 235 63.0
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.9e-70 269.2 235 63.0
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 1.5e-69 267.3 208 67.3
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 5.7e-69 265.4 248 55.6
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.4e-67 260.0 258 58.5
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 3.1e-67 259.6 254 58.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 3.4e-66 256.1 185 69.7
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.5e-64 250.0 219 58.9
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.2e-64 249.6 253 53.8
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 6.1e-63 245.4 245 52.2
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.3e-62 244.2 254 51.6
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 3.0e-62 243.0 186 68.3
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.0e-62 243.0 218 57.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-59 234.6 268 53.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.4e-59 234.2 227 57.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-59 234.2 211 60.7
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 9.1e-59 231.5 215 53.0
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-57 227.6 172 68.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.1e-55 220.3 169 65.7
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.8e-38 164.1 123 69.1
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.8e-36 156.8 191 49.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 6.3e-36 155.6 209 42.6
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 2.0e-34 150.6 253 38.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 9.8e-29 131.7 154 48.7
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.3e-25 121.3 209 31.6
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 5.2e-22 109.4 63 82.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.7e-21 105.9 87 59.8
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.4e-19 101.3 70 65.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 7.3e-16 89.0 47 89.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.2e-15 88.2 81 64.2
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 3.0e-14 83.6 78 61.5
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 8.9e-14 82.0 46 84.8
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 6.4e-12 75.9 120 43.3
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.2e-10 71.6 36 94.4
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 1.2e-10 71.6 45 82.2
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 4.6e-10 69.7 70 58.6
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.2e-07 61.6 54 51.9


User provided reference genes

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