Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.2e-94 349.0 177 100.0
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 7.5e-63 244.2 165 77.0
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.9e-62 242.3 165 75.8
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.4e-62 241.1 165 75.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.3e-62 240.7 165 75.2
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.2e-60 236.9 165 75.2
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.6e-60 236.5 165 75.2
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 4.6e-60 235.0 165 73.9
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.9e-58 229.6 158 74.7
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-58 229.6 158 74.7
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.5e-58 229.2 165 70.9
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.2e-57 226.9 165 71.5
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.2e-57 226.9 165 71.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.2e-57 226.9 165 71.5
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.6e-57 226.5 165 71.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 1.6e-57 226.5 165 70.9
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 1.6e-57 226.5 165 70.9
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.6e-57 225.3 165 70.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.7e-57 224.9 165 69.7
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 6.2e-57 224.6 165 71.5
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 6.2e-57 224.6 165 70.9
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.2e-57 224.6 165 69.7
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.1e-56 223.8 165 69.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.4e-56 223.4 171 70.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.4e-56 223.4 165 70.3
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.0e-56 221.9 165 67.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.0e-56 221.9 165 67.9
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 6.8e-56 221.1 165 70.9
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 8.9e-56 220.7 159 71.7
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.9e-56 220.7 165 69.7
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.0e-55 219.5 165 68.5
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 2.0e-55 219.5 171 69.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.0e-55 219.5 165 67.9
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.6e-55 219.2 171 70.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.4e-55 218.8 165 69.1
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.4e-55 218.4 165 69.1
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.4e-55 218.4 165 67.3
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.6e-55 217.6 165 67.9
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.6e-55 217.6 165 67.9
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 7.6e-55 217.6 165 69.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 7.6e-55 217.6 171 67.8
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.2e-54 216.1 163 66.9
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.9e-54 215.7 163 66.3
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.9e-54 215.7 165 66.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.9e-54 215.7 163 66.3
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.7e-54 215.3 163 66.3
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.7e-54 215.3 165 66.1
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 3.7e-54 215.3 171 67.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 4.9e-54 214.9 171 68.4
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 4.9e-54 214.9 169 65.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 4.9e-54 214.9 165 66.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.3e-54 214.2 163 68.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.1e-53 213.8 165 66.7
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.1e-53 213.8 165 67.9
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.4e-53 213.4 165 65.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 3.2e-53 212.2 165 66.1
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.2e-53 212.2 171 66.7
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 4.1e-53 211.8 163 65.6
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.4e-53 211.5 165 66.7
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 5.4e-53 211.5 163 65.6
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-52 210.3 165 64.8
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.2e-52 210.3 165 66.1
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.2e-52 210.3 165 65.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.6e-52 209.9 171 68.4
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.5e-52 208.8 165 62.4
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 6.0e-52 208.0 165 65.5
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.0e-52 208.0 165 65.5
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.0e-52 208.0 165 66.7
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.0e-52 208.0 170 64.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 7.8e-52 207.6 165 64.8
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.0e-51 207.2 161 65.8
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.3e-51 206.1 163 66.3
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 6.6e-51 204.5 165 64.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 6.6e-51 204.5 165 61.8
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.1e-50 203.8 158 65.2
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-50 203.8 166 63.9
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.5e-50 203.4 159 63.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.9e-50 203.0 158 64.6
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.5e-50 202.6 165 64.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.5e-50 202.6 163 65.6
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.3e-50 202.2 161 65.8
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 3.3e-50 202.2 163 65.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 4.3e-50 201.8 163 65.6
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.3e-50 201.8 165 61.2
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.6e-50 201.4 165 63.6
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 5.6e-50 201.4 163 65.0
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.2e-49 200.3 165 61.8
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.2e-49 200.3 165 61.2
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.2e-49 200.3 163 61.3
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 8.1e-49 197.6 170 60.0
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.1e-49 197.6 163 62.6
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 1.1e-48 197.2 169 63.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-48 196.8 159 62.3
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.4e-48 196.1 161 60.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.2e-48 194.9 163 61.3
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.9e-48 194.1 165 60.6
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 8.9e-48 194.1 163 58.9
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.2e-47 193.7 163 60.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.2e-47 193.7 163 60.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.2e-47 193.7 163 60.1
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-47 193.7 170 59.4
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.5e-47 193.4 181 56.9
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.5e-47 193.4 159 61.6
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.0e-47 193.0 159 59.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.4e-47 192.2 163 62.0
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.4e-47 191.8 164 64.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.8e-47 191.4 170 58.8
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 7.6e-47 191.0 174 59.2
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 7.6e-47 191.0 164 62.2
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.3e-46 190.3 164 59.1
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 1.3e-46 190.3 159 61.0
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.3e-46 190.3 163 59.5
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.3e-46 190.3 163 59.5
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.3e-46 190.3 170 58.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 2.2e-46 189.5 172 59.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.9e-46 189.1 166 62.7
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.4e-45 186.0 166 57.2
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 3.2e-45 185.7 158 62.0
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 5.4e-45 184.9 165 61.2
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 5.4e-45 184.9 172 58.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 9.3e-45 184.1 165 57.6
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.2e-44 183.7 159 58.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.0e-43 180.6 151 63.6
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.5e-42 176.0 167 55.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.3e-42 175.3 164 56.1
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.1e-41 172.9 161 56.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 8.1e-41 171.0 159 57.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 3.1e-40 169.1 161 55.3
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.3e-38 163.7 166 51.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.7e-38 163.3 160 57.5
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 3.2e-37 159.1 166 53.0
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.2e-37 159.1 162 52.5
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.1e-36 156.4 103 72.8
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.7e-36 156.0 162 55.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.1e-28 129.8 169 44.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.8e-25 119.4 182 41.8
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 3.8e-22 109.0 160 38.1
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 4.9e-22 108.6 98 54.1
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.1e-21 104.8 108 53.7
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-19 99.8 102 51.0
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.3e-18 95.9 118 48.3
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.6e-17 93.6 58 81.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.5e-15 85.5 59 67.8
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.6e-15 84.7 55 70.9
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.9e-11 72.4 41 82.9
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.5e-06 55.1 43 62.8


User provided reference genes

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