Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 4457.1 2292 100.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2392.5 2551 53.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2271.1 2551 51.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2266.1 2548 50.6
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2262.6 2568 51.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2210.6 2554 50.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2199.1 2536 49.9
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2168.7 2554 49.5
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2159.8 2559 49.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2148.6 2567 49.2
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2141.3 2562 48.9
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2132.8 2572 48.3
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2124.7 2466 50.0
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2108.2 2574 48.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2104.7 2536 48.4
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2081.6 2254 52.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2017.3 2548 46.6
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1993.8 2555 45.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1932.1 2529 45.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1927.1 2629 45.2
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1900.9 2552 45.1
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1888.2 2528 45.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1867.8 2537 44.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1867.8 2662 43.4
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1844.3 1813 55.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1829.7 2544 43.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1829.3 2544 43.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1828.1 2598 43.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1823.5 2541 43.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1822.4 2384 45.5
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1814.3 2521 44.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1799.6 2538 44.2
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1786.9 2612 43.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1760.0 2437 44.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1749.6 2554 42.2
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1742.2 2527 41.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1739.9 2538 41.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1738.0 2438 44.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1736.9 2433 44.1
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1718.0 2490 43.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1712.2 2534 41.2
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1711.8 2536 42.8
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1707.2 2528 41.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1705.3 2435 43.7
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1697.2 2595 41.8
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1694.5 2511 41.5
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1692.6 2505 41.8
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1691.4 2567 40.8
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1682.9 2537 41.2
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1681.8 2557 41.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1665.6 2544 40.8
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1644.0 2626 40.3
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1631.7 2533 41.1
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1624.8 2527 40.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1608.2 2551 40.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1607.8 2545 40.2
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1605.5 2544 40.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1605.1 2524 40.2
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1597.4 2365 42.2
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1596.6 2593 40.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1595.5 2510 41.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1591.6 2553 40.9
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1586.2 2448 41.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1585.5 2600 39.4
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1581.6 2614 39.1
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1579.3 2456 41.6
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1578.5 2588 39.3
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1573.9 2588 40.4
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1573.5 2531 40.5
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1553.5 2587 39.0
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1552.3 2574 39.5
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1548.1 2558 39.1
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1543.5 2681 38.3
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1524.6 2548 39.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1521.9 2508 39.8
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1464.1 2429 38.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1461.0 2540 39.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1459.9 2423 40.4
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1444.9 2485 39.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1440.2 2420 38.8
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1425.2 2113 41.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1419.1 2546 38.1
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1360.9 2526 38.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1339.7 2145 40.4
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1315.1 2358 37.1
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1271.9 1652 45.8
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1237.2 1799 41.8
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1215.7 2164 38.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1209.5 2598 34.1
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1186.8 2365 35.1
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1184.1 2134 37.3
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1161.0 1947 37.9
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1121.7 2409 35.4
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 4.2e-307 1059.3 2139 35.5
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 1.6e-301 1040.8 1962 35.5
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.4e-256 889.8 1557 38.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-249 868.2 1648 36.1
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.2e-249 866.3 777 61.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-213 748.8 1241 38.8
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.0e-212 744.2 627 64.4
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 4.7e-189 667.2 2262 28.4
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.1e-185 652.9 582 60.7
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.3e-180 638.3 723 50.5
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.5e-163 582.4 533 59.1
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.7e-162 578.9 838 43.3
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.0e-156 559.7 618 50.3
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.5e-150 538.5 2713 24.3
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.6e-150 537.3 758 44.9
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.0e-143 515.0 507 56.8
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 6.8e-140 503.8 2688 24.2
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-126 459.9 805 37.3
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-122 446.4 741 37.2
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-121 443.0 659 44.2
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 2.4e-121 442.2 2465 25.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.9e-120 437.2 1099 30.8
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 5.6e-118 431.0 2667 23.1
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.3e-111 409.8 478 47.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.0e-111 408.7 1006 33.2
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.8e-107 394.4 476 50.6
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.2e-105 388.7 473 47.6
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.9e-102 379.4 325 61.2
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.3e-102 378.6 717 37.8
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.9e-94 352.8 339 59.0
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-93 350.1 546 39.7
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.5e-81 309.3 396 46.2
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.5e-78 300.1 487 38.8
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-65 257.3 187 67.9
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.9e-59 235.0 221 56.6
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 5.0e-58 231.9 178 62.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 4.4e-54 218.8 192 60.9
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-50 207.2 337 37.7
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.6e-48 200.3 152 67.8
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.9e-43 181.8 386 32.9
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 3.0e-42 179.5 233 44.6
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.4e-38 165.6 1008 23.8
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 4.1e-36 159.1 284 39.1
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-34 154.5 260 39.6
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.3e-34 154.1 206 44.7
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 4.3e-33 149.1 139 54.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.8e-32 146.4 257 40.5
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.4e-28 133.3 120 59.2
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.9e-23 114.8 200 38.5
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.4e-22 112.8 92 57.6
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 4.4e-22 112.5 136 52.2
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 2.2e-21 110.2 346 30.6
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.2e-20 106.3 178 37.1
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.2e-20 104.8 404 24.3
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.7e-19 103.2 134 45.5
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-18 100.5 72 66.7
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.1e-17 97.8 176 38.1
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 3.3e-17 96.3 112 49.1
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.5e-14 87.4 181 36.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.5e-14 87.4 64 62.5
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 2.0e-14 87.0 226 25.2
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 9.9e-14 84.7 114 46.5
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 8.4e-13 81.6 82 50.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 8.4e-13 81.6 82 50.0
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 1.4e-12 80.9 113 42.5
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 9.3e-12 78.2 62 61.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.1e-11 77.0 250 29.6
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.7e-11 76.6 154 37.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 7.3e-09 68.6 265 26.8
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 9.6e-09 68.2 50 64.0
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 3.6e-08 66.2 435 21.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 6.2e-08 65.5 71 52.1
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-07 64.7 93 40.9
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 2.4e-07 63.5 51 58.8
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 9.0e-07 61.6 112 44.6
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-06 61.2 107 29.0
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 3.4e-06 59.7 50 58.0
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 9.9e-06 58.2 54 55.6
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 9.9e-06 58.2 54 55.6


User provided reference genes

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