Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.7e-199 698.0 343 100.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.3e-31 141.4 124 62.1
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 1.5e-30 137.9 122 64.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 3.6e-29 133.3 124 60.5
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 4.7e-29 132.9 124 60.5
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.4e-28 131.3 125 61.6
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.4e-28 130.6 124 61.3
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 3.1e-28 130.2 126 57.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 5.2e-28 129.4 127 59.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 5.2e-28 129.4 132 57.6
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 3.4e-27 126.7 125 60.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 3.4e-27 126.7 120 53.3
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.8e-27 125.9 126 61.1
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 7.6e-27 125.6 124 57.3
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 9.9e-27 125.2 135 53.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 4.9e-26 122.9 126 56.3
Cpa.g.sc117.92 Carica papaya HOM05D020865 ORTHO05D004075 6.4e-26 122.5 72 79.2
Cpa.g.sc49.58 Carica papaya HOM05D020865 ORTHO05D004075 1.4e-25 121.3 72 80.6
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.4e-25 121.3 125 55.2
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.4e-25 121.3 129 54.3
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 4.2e-25 119.8 129 55.8
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 7.1e-25 119.0 127 56.7
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 9.3e-25 118.6 125 57.6
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.2e-24 118.2 124 60.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.6e-24 116.3 182 45.6
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 6.0e-24 115.9 123 55.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 7.8e-24 115.5 125 56.0
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.0e-23 115.2 124 55.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.3e-23 114.8 127 55.9
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-23 114.8 127 55.9
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-23 114.8 127 55.9
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-23 114.8 127 55.9
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.3e-23 114.8 124 59.7
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.3e-23 114.8 124 56.5
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 1.3e-23 114.8 122 54.9
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.7e-23 114.4 129 54.3
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 3.0e-23 113.6 132 51.5
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.0e-23 113.6 124 58.9
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 3.0e-23 113.6 124 56.5
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 8.7e-23 112.1 127 54.3
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.5e-22 111.3 124 58.1
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.5e-22 110.5 130 51.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.5e-22 110.5 120 50.0
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 2.5e-22 110.5 124 54.8
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 5.6e-22 109.4 120 50.8
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 5.6e-22 109.4 129 51.9
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.6e-21 107.8 120 49.2
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 4.8e-21 106.3 120 48.3
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 8.1e-21 105.5 128 48.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.1e-20 105.1 120 48.3
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.1e-20 105.1 134 50.7
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.1e-20 105.1 120 45.8
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.4e-20 104.8 134 50.0
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.4e-20 104.8 120 49.2
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.8e-20 104.4 120 54.2
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 2.4e-20 104.0 120 48.3
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 2.4e-20 104.0 120 48.3
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.4e-20 104.0 127 48.8
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 3.1e-20 103.6 124 49.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 9.0e-20 102.1 120 48.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.2e-19 101.7 120 48.3
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 2.6e-19 100.5 120 46.7
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 3.4e-19 100.1 122 52.5
Cpa.g.sc10.142 Carica papaya HOM05D020865 ORTHO05D004075 3.4e-19 100.1 70 68.6
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 4.4e-19 99.8 124 48.4
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 5.8e-19 99.4 120 48.3
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 5.8e-19 99.4 126 51.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 5.8e-19 99.4 120 49.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 5.8e-19 99.4 124 45.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.6e-19 99.0 119 45.4
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.6e-19 99.0 125 46.4
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 9.9e-19 98.6 137 46.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.9e-19 98.6 134 47.0
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.3e-18 98.2 120 48.3
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.3e-18 98.2 131 49.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.7e-18 97.8 134 47.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.9e-18 97.1 132 47.0
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 2.9e-18 97.1 124 50.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.8e-18 96.7 131 50.4
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.8e-18 96.7 131 50.4
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 3.8e-18 96.7 121 45.5
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 6.4e-18 95.9 125 52.0
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 8.4e-18 95.5 122 49.2
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.1e-17 95.1 123 52.8
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.1e-17 95.1 127 48.0
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 2.4e-17 94.0 132 49.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.4e-17 94.0 132 48.5
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 4.2e-17 93.2 132 49.2
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 5.4e-17 92.8 127 48.0
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 5.4e-17 92.8 125 45.6
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 9.3e-17 92.0 132 47.0
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 9.3e-17 92.0 121 47.9
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.2e-16 91.7 124 41.9
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-16 91.7 123 46.3
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 3.5e-16 90.1 124 49.2
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 6.0e-16 89.4 120 46.7
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 7.9e-16 89.0 130 43.1
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.7e-15 87.8 122 47.5
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.7e-15 87.8 120 45.8
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.7e-15 87.8 135 43.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.3e-15 87.4 122 45.1
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 3.0e-15 87.0 55 74.5
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.0e-15 87.0 129 44.2
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.9e-15 86.7 120 43.3
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.9e-15 86.7 120 43.3
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 3.9e-15 86.7 120 43.3
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.5e-14 84.7 121 46.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.9e-14 84.3 123 43.9
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.9e-14 84.3 127 38.6
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 4.3e-14 83.2 120 45.0
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 7.3e-14 82.4 120 41.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 1.3e-13 81.6 133 42.1
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.3e-13 81.6 129 41.1
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.6e-13 81.3 123 42.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 3.6e-13 80.1 120 40.8
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 3.6e-13 80.1 121 45.5
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 6.2e-13 79.3 130 40.8
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.1e-13 79.0 135 42.2
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.1e-12 78.6 169 37.3
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 9.0e-12 75.5 124 39.5
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.5e-11 74.7 125 34.4
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.0e-11 74.3 120 43.3
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.8e-11 72.8 124 42.7
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 7.6e-11 72.4 96 46.9
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 7.6e-11 72.4 126 42.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.6e-11 72.4 184 33.7
Cpa.g.sc66.128 Carica papaya HOM05D013729 ORTHO05D010193 9.9e-11 72.0 78 44.9
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 9.9e-11 72.0 120 40.0
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 9.9e-11 72.0 124 41.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 4.9e-10 69.7 123 43.1
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.4e-09 68.2 124 37.9
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.2e-09 66.6 149 31.5
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 7.1e-09 65.9 150 34.0
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.6e-08 64.7 56 60.7
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.6e-08 64.7 126 37.3
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 6.0e-08 62.8 125 37.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.8e-07 61.2 122 36.9
SHI29645 Sapria himalayana HOM05D001849 ORTHO05D000062 3.0e-07 60.5 90 42.2
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 6.7e-07 59.3 49 59.2
Cpa.g.c35233.3 Carica papaya HOM05D017488 ORTHO05D004075 8.7e-07 58.9 54 44.4
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 8.7e-07 58.9 50 52.0
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 1.5e-06 58.2 107 36.4


User provided reference genes

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