Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc245.6 Carica papaya HOM05D003126 ORTHO05D005034 1.1e-119 433.3 226 100.0
QL04p005483 Quercus lobata HOM05D003126 ORTHO05D005034 7.6e-60 234.6 216 64.4
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 6.9e-53 211.5 217 58.1
Dinv09367 Davidia involucrata HOM05D003126 ORTHO05D005034 1.5e-52 210.3 209 57.9
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 3.8e-51 205.7 217 57.6
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 3.8e-51 205.7 217 57.6
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 1.1e-50 204.1 217 54.8
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.9e-50 203.4 220 55.5
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 5.5e-50 201.8 217 56.2
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 5.5e-50 201.8 217 56.2
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 5.5e-50 201.8 217 56.2
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 7.2e-50 201.4 204 56.9
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 9.3e-50 201.1 217 55.8
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 1.3e-48 197.2 217 55.3
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 2.3e-48 196.4 206 54.9
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 3.9e-48 195.7 216 56.9
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 5.1e-48 195.3 212 54.7
CSS0033444 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 5.1e-48 195.3 212 54.7
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 4.3e-47 192.2 216 55.1
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 7.4e-47 191.4 206 54.9
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 9.7e-47 191.0 204 54.4
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 2.2e-46 189.9 215 53.5
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.1e-45 187.6 203 56.2
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 2.4e-45 186.4 201 56.2
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 4.1e-45 185.7 214 53.3
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 4.1e-45 185.7 208 55.3
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 5.3e-45 185.3 208 51.4
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 6.9e-45 184.9 216 50.9
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 9.0e-45 184.5 203 55.2
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 5.9e-44 181.8 208 51.0
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 5.0e-43 178.7 217 52.1
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 6.5e-43 178.3 211 51.7
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 1.1e-42 177.6 185 58.9
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 7.2e-42 174.9 216 53.2
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 4.6e-41 172.2 214 48.6
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 6.1e-41 171.8 202 51.5
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 1.8e-40 170.2 212 50.0
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 2.3e-40 169.9 199 53.8
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 8.8e-40 167.9 209 51.7
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.5e-39 167.2 216 50.0
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 3.3e-39 166.0 215 51.6
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 3.3e-39 166.0 216 50.0
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.3e-38 164.1 218 48.6
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 1.3e-38 164.1 215 48.8
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 3.7e-38 162.5 214 48.1
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 3.7e-38 162.5 190 53.2
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 4.8e-38 162.2 218 49.1
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 4.8e-38 162.2 215 48.8
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 1.1e-37 161.0 213 48.4
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.8e-37 160.2 200 48.5
EL10Ac2g04311 Beta vulgaris HOM05D003126 ORTHO05D005034 2.4e-37 159.8 214 48.1
arahy.Tifrunner.gnm1.ann1.4P5PRD Arachis hypogaea HOM05D003126 ORTHO05D005034 5.3e-37 158.7 212 47.2
arahy.Tifrunner.gnm1.ann1.6ZH3JQ Arachis hypogaea HOM05D003126 ORTHO05D005034 6.9e-37 158.3 212 47.2
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 6.9e-37 158.3 212 47.6
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 6.9e-37 158.3 195 51.8
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 2.0e-36 156.8 216 45.4
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 2.0e-36 156.8 215 47.4
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 3.4e-36 156.0 209 47.4
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 3.8e-35 152.5 189 49.7
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 6.5e-35 151.8 212 48.6
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 4.2e-34 149.1 198 50.0
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 5.5e-34 148.7 212 46.2
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 5.5e-34 148.7 206 47.6
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 3.6e-33 146.0 212 45.3
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 6.1e-33 145.2 212 45.3
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 7.9e-33 144.8 222 44.6
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 1.4e-32 144.1 214 44.9
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 2.3e-32 143.3 222 44.1
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 3.9e-32 142.5 199 46.2
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 6.7e-32 141.7 211 43.6
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 2.0e-31 140.2 209 45.9
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 5.7e-31 138.7 206 45.6
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 1.3e-30 137.5 217 45.2
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 1.1e-29 134.4 214 44.4
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.1e-29 134.4 223 43.0
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 9.1e-29 131.3 206 43.2
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.6e-28 130.6 223 40.8
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 5.9e-28 128.6 178 48.3
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 7.7e-28 128.3 208 42.8
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 8.5e-27 124.8 201 46.8
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 1.1e-26 124.4 214 38.8
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 2.5e-26 123.2 208 39.9
Lj7A569T65 Lonicera japonica HOM05D003126 ORTHO05D005034 4.7e-25 119.0 212 43.4
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 4.7e-25 119.0 211 44.1
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 1.4e-24 117.5 240 35.4
FAN01G1724 Fragaria x ananassa HOM05D003126 ORTHO05D005034 1.8e-24 117.1 155 46.5
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 1.8e-24 117.1 221 41.2
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 2.3e-24 116.7 197 45.2
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 8.8e-24 114.8 221 39.4
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 1.5e-23 114.0 211 43.1
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 2.6e-23 113.2 208 41.8
Sp3g10780 Schrenkiella parvula HOM05D003126 ORTHO05D005034 7.5e-23 111.7 186 44.1
AL3G24310 Arabidopsis lyrata HOM05D003126 ORTHO05D005034 4.8e-22 109.0 213 40.4
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 4.8e-22 109.0 207 35.3
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 1.4e-21 107.5 201 37.8
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 1.4e-21 107.5 215 40.5
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 2.4e-21 106.7 185 39.5
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 4.1e-21 105.9 144 47.9
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 4.1e-21 105.9 173 44.5
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 5.3e-21 105.5 209 39.2
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 1.6e-20 104.0 199 37.7
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 4.5e-20 102.4 207 36.2
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 1.3e-19 100.9 173 41.6
BcaB04g18712 Brassica carinata HOM05D003126 ORTHO05D005034 1.3e-19 100.9 160 44.4
BcaC01g04024 Brassica carinata HOM05D003126 ORTHO05D005034 1.7e-19 100.5 177 43.5
C03p45780 Brassica napus HOM05D003126 ORTHO05D005034 1.7e-19 100.5 177 43.5
BolC3t16853H Brassica oleracea HOM05D003126 ORTHO05D005034 1.7e-19 100.5 177 43.5
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 1.7e-19 100.5 153 45.8
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 5.0e-19 99.0 143 46.9
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 8.5e-19 98.2 179 41.3
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 8.5e-19 98.2 179 41.3
Lsat_1_v5_gn_1_108381 Lactuca sativa HOM05D003126 ORTHO05D005034 8.5e-19 98.2 208 37.0
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 1.9e-18 97.1 178 41.0
Thhalv10020251m.g Eutrema salsugineum HOM05D003126 ORTHO05D005034 1.9e-18 97.1 208 38.0
BraA03t12928Z Brassica rapa HOM05D003126 ORTHO05D005034 1.2e-17 94.4 183 42.1
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 1.6e-17 94.0 171 43.9
A03p37730 Brassica napus HOM05D003126 ORTHO05D005034 2.7e-17 93.2 181 41.4
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 4.7e-17 92.4 210 39.0
Lsat_1_v5_gn_8_14081 Lactuca sativa HOM05D003126 ORTHO05D005034 1.2e-15 87.8 209 35.9
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 2.0e-15 87.0 199 32.7
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 3.4e-15 86.3 172 42.4
CARHR087150 Cardamine hirsuta HOM05D003126 ORTHO05D005034 5.7e-15 85.5 215 33.5
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 3.1e-13 79.7 199 34.7
Zm00001eb424740 Zea mays HOM05D003126 ORTHO05D005034 9.1e-13 78.2 199 33.7
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 1.0e-11 74.7 171 38.0
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 2.2e-11 73.6 161 42.9
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 8.5e-11 71.6 137 40.9
SEGI_13274 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 7.2e-10 68.6 175 34.3
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 3.6e-09 66.2 223 28.7
SEGI_32234 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 3.6e-09 66.2 242 28.1
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 8.0e-09 65.1 153 33.3
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 8.8e-08 61.6 154 36.4
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 9.8e-07 58.2 184 31.0


User provided reference genes

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