Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2302.1 Carica papaya HOM05D004510 ORTHO05D005302 2.6e-77 292.0 146 100.0
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 1.3e-68 263.1 143 91.6
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 2.9e-68 261.9 141 89.4
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 3.8e-68 261.5 143 90.9
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 4.9e-68 261.2 143 88.8
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 6.4e-68 260.8 142 90.1
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.4e-67 259.6 143 88.8
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 1.4e-67 259.6 143 89.5
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 2.4e-67 258.8 144 88.2
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.2e-67 258.1 143 88.8
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.2e-67 258.1 143 88.8
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 4.2e-67 258.1 143 88.8
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 5.4e-67 257.7 143 89.5
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 5.4e-67 257.7 143 89.5
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 5.4e-67 257.7 142 88.0
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 5.4e-67 257.7 143 88.8
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 7.1e-67 257.3 142 88.7
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 7.1e-67 257.3 143 88.1
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.6e-66 256.1 143 88.1
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 1.6e-66 256.1 143 85.3
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 2.1e-66 255.8 143 88.1
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 2.7e-66 255.4 143 87.4
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.7e-66 255.4 143 88.1
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.7e-66 255.4 143 88.1
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 2.7e-66 255.4 143 88.1
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 3.5e-66 255.0 142 88.0
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 4.6e-66 254.6 142 88.7
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 4.6e-66 254.6 143 87.4
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 6.0e-66 254.2 143 87.4
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 6.0e-66 254.2 143 86.7
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 1.3e-65 253.1 143 86.7
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 1.7e-65 252.7 143 86.0
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 1.7e-65 252.7 143 86.7
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 2.3e-65 252.3 143 84.6
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 3.0e-65 251.9 143 86.7
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 3.0e-65 251.9 143 88.1
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 3.9e-65 251.5 143 84.6
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 5.1e-65 251.1 143 86.7
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 5.1e-65 251.1 143 85.3
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 5.1e-65 251.1 143 86.0
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 6.6e-65 250.8 143 84.6
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 6.6e-65 250.8 143 86.0
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 6.6e-65 250.8 143 85.3
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 8.7e-65 250.4 143 86.0
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 1.1e-64 250.0 143 85.3
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.5e-64 249.6 144 84.0
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.5e-64 249.6 143 86.7
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 1.9e-64 249.2 143 85.3
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.9e-64 249.2 143 85.3
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 2.5e-64 248.8 143 85.3
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 3.3e-64 248.4 143 88.1
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 4.3e-64 248.1 143 84.6
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 4.3e-64 248.1 143 83.2
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 5.6e-64 247.7 143 84.6
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 5.6e-64 247.7 143 83.2
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 7.3e-64 247.3 143 83.9
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 7.3e-64 247.3 143 83.2
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 7.3e-64 247.3 143 84.6
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 9.6e-64 246.9 143 84.6
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 9.6e-64 246.9 143 84.6
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 9.6e-64 246.9 143 84.6
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 1.3e-63 246.5 143 82.5
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 1.3e-63 246.5 143 83.9
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.3e-63 246.5 143 81.8
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.6e-63 246.1 143 83.2
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.6e-63 246.1 143 83.9
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 1.6e-63 246.1 142 86.6
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 1.6e-63 246.1 143 83.9
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 2.1e-63 245.7 143 83.9
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 2.1e-63 245.7 143 82.5
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 2.1e-63 245.7 143 84.6
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 2.8e-63 245.4 141 85.8
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 3.6e-63 245.0 143 82.5
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 6.2e-63 244.2 143 83.9
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 8.1e-63 243.8 143 82.5
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 1.1e-62 243.4 143 82.5
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 1.1e-62 243.4 133 91.0
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 1.4e-62 243.0 143 81.8
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.8e-62 242.7 143 83.9
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 2.4e-62 242.3 143 81.8
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 2.4e-62 242.3 143 83.9
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 2.4e-62 242.3 143 81.8
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.1e-62 241.9 141 83.0
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.1e-62 241.9 141 83.0
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 3.1e-62 241.9 143 81.8
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 4.0e-62 241.5 143 81.8
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 9.0e-62 240.4 142 82.4
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 1.2e-61 240.0 143 81.8
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 1.2e-61 240.0 143 81.8
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 1.5e-61 239.6 143 80.4
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 2.6e-61 238.8 143 81.1
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.6e-61 238.8 142 80.3
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 3.4e-61 238.4 143 80.4
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 3.4e-61 238.4 142 80.3
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 1.7e-60 236.1 143 79.7
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 3.8e-60 235.0 143 79.0
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 6.4e-60 234.2 143 79.7
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 6.4e-60 234.2 141 83.0
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 1.1e-59 233.4 143 79.7
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 1.1e-59 233.4 143 79.7
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 1.1e-59 233.4 143 79.7
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.1e-59 233.4 144 81.2
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 1.4e-59 233.0 142 79.6
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 9.3e-59 230.3 143 81.1
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 1.0e-57 226.9 142 77.5
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 3.3e-56 221.9 143 76.2
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 9.6e-56 220.3 143 79.0
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 1.1e-54 216.9 143 73.4
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 1.4e-54 216.5 140 74.3
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 7.6e-53 210.7 139 72.7
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 2.9e-52 208.8 142 69.7
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.2e-51 205.3 143 70.6
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 9.3e-51 203.8 142 67.6
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.3e-49 199.1 143 67.8
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.3e-49 199.1 143 67.8
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 1.9e-48 196.1 142 66.9
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.9e-48 196.1 143 71.3
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 7.4e-48 194.1 142 70.4
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.4e-46 189.1 120 75.8
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 2.9e-44 182.2 141 67.4
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 1.2e-42 176.8 139 64.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-41 171.0 143 60.8
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.4e-38 163.3 143 58.0
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 1.7e-36 156.4 141 52.5
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 3.4e-29 132.1 145 45.5
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 4.5e-29 131.7 79 78.5
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 8.8e-25 117.5 70 80.0
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 2.2e-23 112.8 159 40.9
BcaB01g01177 Brassica carinata HOM05D004510 ORTHO05D005302 7.2e-19 97.8 82 56.1
Cre09.g392504 Chlamydomonas reinhardtii HOM05D004510 ORTHO05D005302 8.2e-07 57.8 60 38.3


User provided reference genes

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