Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 0.0e+00 1107.8 577 100.0
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 1.2e-218 763.5 472 80.1
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 3.0e-217 758.8 472 80.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 1.6e-215 753.1 472 78.8
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.6e-215 753.1 472 78.4
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 2.1e-215 752.7 472 79.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 4.7e-215 751.5 472 78.0
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 4.7e-215 751.5 472 78.2
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.4e-214 750.0 472 78.0
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 2.0e-213 746.1 472 78.4
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 2.9e-212 742.3 472 76.5
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 1.1e-211 740.3 472 77.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 1.9e-211 739.6 504 73.8
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 3.5e-210 735.3 472 76.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 6.0e-210 734.6 472 76.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 1.4e-206 723.4 472 75.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 1.8e-206 723.0 471 76.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 6.9e-206 721.1 468 76.3
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 1.2e-205 720.3 471 76.6
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 1.3e-204 716.8 472 74.4
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 1.7e-204 716.5 470 75.1
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 3.8e-204 715.3 470 76.6
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 1.1e-203 713.8 470 75.3
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.1e-203 713.8 480 74.4
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 1.2e-202 710.3 471 75.4
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 1.6e-202 709.9 472 73.9
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.7e-202 709.1 472 73.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 6.0e-202 708.0 488 73.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 2.3e-201 706.1 470 73.6
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 3.9e-201 705.3 471 74.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 3.9e-201 705.3 472 73.7
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 6.6e-201 704.5 469 74.0
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 1.1e-200 703.7 504 70.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 9.6e-200 700.7 473 72.5
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 2.8e-199 699.1 473 72.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.2e-199 698.0 470 73.0
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 8.1e-199 697.6 472 73.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 1.4e-198 696.8 472 72.5
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 3.1e-198 695.7 472 72.2
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 4.0e-198 695.3 472 72.0
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 2.0e-197 693.0 471 72.4
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 2.6e-197 692.6 472 71.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 4.5e-197 691.8 472 72.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 9.9e-197 690.6 472 73.1
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 1.3e-196 690.3 480 72.5
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 2.9e-196 689.1 474 72.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 4.9e-196 688.3 471 73.5
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 4.9e-196 688.3 472 72.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 8.4e-196 687.6 472 71.6
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 1.4e-195 686.8 472 71.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.9e-195 686.4 472 71.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 3.2e-195 685.6 472 71.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 3.2e-195 685.6 504 67.9
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 4.2e-195 685.3 471 73.2
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 2.1e-194 682.9 471 73.0
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 2.1e-194 682.9 471 73.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 2.3e-193 679.5 483 70.0
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.9e-193 678.7 470 72.3
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 1.9e-192 676.4 472 69.5
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 3.3e-192 675.6 445 76.6
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.3e-192 675.2 469 72.1
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 1.6e-191 673.3 472 69.5
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 1.1e-190 670.6 472 69.9
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 1.1e-190 670.6 472 69.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 9.0e-190 667.5 471 69.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 1.5e-189 666.8 504 68.1
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.0e-189 666.4 471 69.2
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 2.6e-189 666.0 471 69.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 7.1e-187 657.9 494 69.4
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.2e-186 657.1 419 78.5
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 7.9e-186 654.4 472 69.5
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 2.1e-183 646.4 472 67.6
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 7.6e-181 637.9 411 76.9
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 2.2e-180 636.3 475 67.6
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 2.7e-178 629.4 496 65.7
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.6e-175 620.2 472 67.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 1.8e-174 616.7 473 65.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 2.4e-174 616.3 473 66.0
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 1.5e-173 613.6 473 66.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 2.6e-173 612.8 473 64.5
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 1.4e-171 607.1 489 66.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 1.4e-171 607.1 430 70.0
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 1.4e-166 590.5 577 56.0
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.5e-155 553.1 349 78.8
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.6e-152 543.1 397 67.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 2.6e-152 543.1 531 55.7
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.7e-151 539.3 501 56.7
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 1.4e-150 537.3 347 77.5
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 1.2e-141 507.7 465 55.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 1.7e-140 503.8 472 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 1.2e-138 497.7 473 54.8
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 4.7e-138 495.7 483 54.2
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 4.1e-134 482.6 328 72.9
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 4.2e-131 472.6 506 48.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 5.5e-131 472.2 394 64.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 1.7e-127 460.7 424 58.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 4.7e-114 416.0 476 45.6
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.7e-111 407.5 461 47.7
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.4e-110 404.4 318 66.0
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.0e-108 396.7 293 67.6
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 7.1e-102 375.6 481 44.9
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.9e-97 358.6 223 75.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-78 296.6 179 84.4
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.5e-72 278.1 179 76.0
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.2e-66 255.8 167 73.1
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 3.8e-55 220.3 184 62.5
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-44 185.3 150 62.7
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 9.4e-38 162.5 214 43.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-36 158.3 106 77.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.6e-32 145.2 100 67.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 4.5e-32 143.7 172 47.7
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.7e-31 141.7 93 77.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.7e-27 125.9 91 63.7
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 3.1e-25 120.9 99 60.6
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.0e-23 115.9 73 79.5
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.3e-23 115.5 81 70.4
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 7.2e-22 109.8 195 36.4
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.5e-19 99.8 69 65.2
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.2e-18 98.2 67 67.2
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.5e-16 90.9 98 46.9
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 6.8e-12 76.6 67 61.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.2e-11 75.9 45 73.3
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.9e-10 70.5 76 44.7
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 2.5e-06 58.2 44 61.4


User provided reference genes

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