Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.9e-224 781.6 386 100.0
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 8.1e-187 657.1 381 85.3
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 1.4e-186 656.4 382 85.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 9.9e-185 650.2 382 85.3
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 4.2e-183 644.8 385 84.9
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 7.1e-183 644.0 385 84.2
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 2.3e-181 639.0 384 82.3
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 1.9e-180 636.0 383 84.6
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 2.5e-180 635.6 386 82.9
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 5.6e-180 634.4 389 83.0
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.3e-179 633.3 389 83.0
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 1.4e-178 629.8 382 83.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.8e-178 629.4 384 83.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.9e-178 627.5 384 83.3
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 2.0e-177 625.9 383 82.5
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.6e-177 624.0 384 83.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 6.5e-176 620.9 385 81.3
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 1.1e-175 620.2 381 82.4
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 2.5e-175 619.0 386 80.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.5e-175 619.0 379 83.9
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 4.2e-175 618.2 381 81.6
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 7.9e-174 614.0 383 79.6
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 3.9e-173 611.7 381 80.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 8.7e-173 610.5 396 78.5
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 1.5e-172 609.8 392 80.4
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 3.3e-172 608.6 384 80.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 9.6e-172 607.1 384 80.5
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 1.3e-171 606.7 385 79.2
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.6e-171 606.3 334 88.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 3.7e-171 605.1 384 80.2
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 1.1e-170 603.6 382 79.1
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 3.1e-170 602.1 386 78.8
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 9.0e-170 600.5 382 78.5
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 7.6e-169 597.4 382 79.1
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 1.9e-167 592.8 386 79.0
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 5.5e-167 591.3 383 79.1
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 9.3e-167 590.5 376 79.3
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 1.2e-166 590.1 389 77.4
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.7e-166 589.0 387 76.2
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 4.6e-166 588.2 389 75.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 2.3e-165 585.9 380 78.7
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 3.9e-165 585.1 389 75.8
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.5e-164 583.2 385 77.1
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.9e-164 582.8 377 76.7
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 4.3e-164 581.6 383 77.0
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 4.3e-164 581.6 391 76.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 5.7e-164 581.3 376 78.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 7.4e-164 580.9 395 75.7
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 9.7e-164 580.5 387 76.2
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 2.2e-163 579.3 383 75.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 2.2e-163 579.3 400 73.5
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 4.8e-163 578.2 381 79.3
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 4.8e-163 578.2 366 80.1
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 6.3e-163 577.8 417 71.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 3.1e-162 575.5 383 74.9
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 4.1e-162 575.1 381 75.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 4.1e-162 575.1 381 75.9
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 2.0e-161 572.8 377 76.7
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 2.0e-161 572.8 361 80.6
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 4.5e-161 571.6 388 75.8
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 2.2e-160 569.3 307 88.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 2.2e-160 569.3 314 87.3
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 1.1e-159 567.0 397 74.8
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 1.4e-159 566.6 391 75.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 4.2e-159 565.1 367 79.6
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 7.2e-159 564.3 367 79.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 7.2e-159 564.3 398 73.6
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 2.1e-158 562.8 370 77.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 2.7e-158 562.4 390 74.6
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 4.6e-158 561.6 367 79.6
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 4.6e-158 561.6 367 79.6
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 4.6e-158 561.6 376 77.9
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 2.0e-156 556.2 379 77.0
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 2.6e-153 545.8 330 80.0
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 4.5e-153 545.0 320 81.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 4.5e-153 545.0 329 80.5
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.0e-152 543.9 298 85.9
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 4.2e-151 538.5 434 67.3
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 3.0e-149 532.3 419 68.0
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.0e-148 529.6 357 77.3
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 1.8e-146 523.1 281 87.9
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 3.1e-146 522.3 286 87.8
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 1.3e-144 516.9 280 88.6
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 2.5e-143 512.7 323 75.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.1e-142 509.6 335 74.0
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 1.2e-140 503.8 279 87.1
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 3.3e-140 502.3 382 70.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 2.2e-139 499.6 322 74.8
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 2.0e-137 493.0 347 69.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.7e-136 490.0 313 81.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 6.5e-136 488.0 265 87.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 3.2e-135 485.7 258 89.5
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.2e-134 483.8 534 53.4
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 1.6e-129 466.8 253 88.9
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 8.6e-128 461.1 342 72.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 4.0e-125 452.2 406 62.3
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 6.3e-123 444.9 330 64.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 4.7e-118 428.7 304 67.8
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 4.0e-117 425.6 313 65.2
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.8e-116 421.0 344 67.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-104 384.4 249 79.9
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.5e-103 379.8 218 83.5
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.2e-86 324.3 178 89.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.6e-86 322.8 219 74.0
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 5.8e-84 315.5 299 50.2
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 4.3e-79 299.3 389 48.6
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.6e-65 254.2 173 78.0
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 3.1e-53 213.4 191 63.9
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.0e-40 171.8 115 76.5
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.8e-37 161.0 113 69.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 9.4e-34 148.7 114 64.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.9e-32 143.3 127 67.7
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.9e-32 143.3 127 67.7
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 4.7e-25 119.8 68 85.3
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.3e-14 85.1 109 48.6
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 2.0e-07 61.2 55 56.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 4.4e-07 60.1 45 64.4
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 4.9e-06 56.6 29 86.2


User provided reference genes

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