Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 0.0e+00 1518.4 754 100.0
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1103.2 711 75.5
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1098.2 711 74.8
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 6.2e-311 1070.5 710 73.8
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 7.7e-311 1070.1 711 72.4
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 1.0e-310 1069.7 711 73.8
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 1.8e-310 1068.9 711 72.9
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 3.0e-310 1068.1 713 73.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 8.7e-310 1066.6 711 72.3
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 4.3e-309 1064.3 713 72.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 4.3e-309 1064.3 712 73.3
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 1.3e-308 1062.8 711 71.7
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 2.1e-308 1062.0 711 71.9
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 2.8e-308 1061.6 713 71.8
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 1.1e-307 1059.7 711 71.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 1.8e-307 1058.9 711 71.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 6.9e-307 1057.0 711 72.3
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 1.3e-305 1052.7 711 72.2
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 3.2e-304 1048.1 750 69.3
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.2e-304 1047.7 711 70.7
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 9.3e-304 1046.6 711 70.9
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.6e-303 1045.8 711 71.2
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 4.3e-301 1037.7 711 71.6
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 4.3e-301 1037.7 711 71.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 9.0e-299 1030.0 711 70.2
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 4.2e-296 1021.1 771 66.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 6.0e-295 1017.3 712 70.8
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 7.9e-295 1016.9 711 69.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 5.1e-294 1014.2 711 69.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 1.1e-293 1013.1 711 68.6
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.7e-293 1010.7 712 69.8
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 1.6e-292 1009.2 713 69.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 1.1e-291 1006.5 711 68.2
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.4e-291 1006.1 711 68.5
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 1.8e-291 1005.7 711 68.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 6.9e-291 1003.8 711 68.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 9.0e-291 1003.4 710 68.6
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 9.0e-291 1003.4 711 68.4
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 5.0e-289 997.7 712 68.0
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 6.5e-289 997.3 711 68.6
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 1.9e-288 995.7 711 67.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.5e-288 995.3 716 68.2
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 2.7e-287 991.9 711 68.1
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 4.6e-287 991.1 711 67.7
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 4.6e-287 991.1 711 66.9
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 7.4e-285 983.8 711 67.5
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.0e-282 975.7 741 65.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 2.0e-282 975.7 711 66.9
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 1.0e-281 973.4 711 66.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 2.9e-281 971.8 711 66.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 1.6e-279 966.1 711 67.2
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 1.0e-278 963.4 711 65.4
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 1.8e-278 962.6 711 67.5
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 3.0e-278 961.8 711 66.9
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 3.9e-278 961.4 712 66.2
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 1.3e-276 956.4 711 66.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 2.2e-276 955.7 713 65.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 3.7e-276 954.9 711 66.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 2.4e-275 952.2 711 66.8
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 7.0e-275 950.7 712 65.7
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 3.4e-274 948.3 712 65.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 4.5e-274 948.0 711 64.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 1.3e-273 946.4 712 66.0
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 3.8e-273 944.9 712 65.3
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 3.2e-272 941.8 711 63.9
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 3.2e-272 941.8 711 63.7
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 4.2e-272 941.4 717 65.0
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 1.1e-269 933.3 711 65.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 2.0e-269 932.6 712 64.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 2.6e-269 932.2 720 63.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 2.6e-269 932.2 711 63.0
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 9.7e-269 930.2 712 63.2
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 1.7e-268 929.5 712 65.3
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 2.8e-268 928.7 711 63.7
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 1.1e-267 926.8 711 62.6
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 1.8e-267 926.0 711 63.3
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 2.0e-266 922.5 711 63.4
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 2.2e-265 919.1 713 64.8
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 1.4e-262 909.8 702 62.7
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 3.3e-261 905.2 757 59.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 2.8e-260 902.1 711 61.9
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 3.7e-260 901.7 677 64.7
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.2e-260 900.6 712 61.8
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 5.5e-256 887.9 711 61.3
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 2.7e-255 885.6 711 62.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 2.7e-255 885.6 711 62.0
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 5.2e-254 881.3 651 65.7
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 4.4e-253 878.2 711 61.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 1.3e-252 876.7 720 60.1
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 5.9e-250 867.8 712 62.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 2.3e-246 855.9 712 58.8
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 1.1e-243 847.0 730 57.4
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 3.1e-243 845.5 712 58.6
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 2.7e-242 842.4 748 56.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 1.8e-238 829.7 698 58.7
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 6.0e-234 814.7 703 59.9
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 5.6e-232 808.1 709 56.0
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 2.2e-228 796.2 532 73.7
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.2e-223 780.4 706 58.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 1.8e-222 776.5 709 55.4
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.2e-219 765.8 533 69.0
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 4.1e-219 765.4 721 54.0
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 4.6e-218 761.9 530 69.4
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 4.2e-211 738.8 711 51.9
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 3.0e-193 679.5 711 51.6
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 4.2e-187 659.1 727 46.5
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 2.8e-183 646.4 719 45.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.4e-174 617.5 691 45.7
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 5.9e-173 612.1 722 49.2
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.9e-163 580.5 387 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 7.4e-160 568.5 751 40.9
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 8.0e-154 548.5 592 53.5
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 8.0e-146 521.9 411 63.3
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.1e-131 474.9 702 38.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.3e-121 440.7 632 40.3
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.8e-120 436.0 362 58.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.1e-118 431.8 685 39.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.4e-89 335.1 348 51.4
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 4.9e-87 326.6 263 59.3
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.4e-65 255.4 202 62.9
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.8e-65 255.0 175 70.3
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 6.7e-60 236.5 289 43.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.5e-54 216.9 293 40.6
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.7e-53 214.5 141 73.8
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.6e-37 161.0 167 53.9
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.7e-29 134.8 99 62.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.3e-15 88.6 60 73.3
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 8.9e-12 76.6 60 63.3
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 1.1e-06 59.7 49 55.1


User provided reference genes

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