Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.64 Carica papaya HOM05D000001 ORTHO05D002182 3.0e-63 245.0 121 100.0
Sp7g19160 Schrenkiella parvula HOM05D000001 ORTHO05D002182 7.5e-14 80.9 249 27.7
Duzib132G0111 Durio zibethinus HOM05D000001 ORTHO05D002182 9.8e-14 80.5 52 67.3
Carub.0007s2036 Capsella rubella HOM05D000001 ORTHO05D002182 2.9e-13 79.0 52 71.2
Gohir.A01G128300 Gossypium hirsutum HOM05D000001 ORTHO05D002182 1.9e-12 76.3 56 62.5
Gohir.D01G116400 Gossypium hirsutum HOM05D000001 ORTHO05D002182 5.4e-12 74.7 56 62.5
Gorai.002G141900 Gossypium raimondii HOM05D000001 ORTHO05D002182 5.4e-12 74.7 56 62.5
TWI53G1691 Tripterygium wilfordii HOM05D000001 ORTHO05D002182 5.4e-12 74.7 56 67.9
BcaB03g11700 Brassica carinata HOM05D000001 ORTHO05D002182 7.1e-12 74.3 53 64.2
COL.COLO4_17662 Corchorus olitorius HOM05D000001 ORTHO05D002182 9.2e-12 73.9 52 61.5
Thecc.02G010000 Theobroma cacao HOM05D000001 ORTHO05D002182 9.2e-12 73.9 52 63.5
MELO3C007093.2 Cucumis melo HOM05D000001 ORTHO05D002182 1.2e-11 73.6 57 68.4
AT4G21070 Arabidopsis thaliana HOM05D000001 ORTHO05D002182 1.6e-11 73.2 53 64.2
ClCG01G025010 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.6e-11 73.2 62 66.1
AL7G33060 Arabidopsis lyrata HOM05D000001 ORTHO05D002182 2.1e-11 72.8 53 62.3
Ciclev10014038m.g Citrus clementina HOM05D000001 ORTHO05D002182 2.1e-11 72.8 56 62.5
Prupe.4G087500 Prunus persica HOM05D000001 ORTHO05D002182 2.1e-11 72.8 57 64.9
THA.LOC104812328 Tarenaya hassleriana HOM05D000001 ORTHO05D002182 2.1e-11 72.8 52 65.4
MBI02_g26596_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D002182 2.7e-11 72.4 53 64.2
QL05p054340 Quercus lobata HOM05D000001 ORTHO05D002182 2.7e-11 72.4 57 63.2
Atru.chr10.1032 Acer truncatum HOM05D000001 ORTHO05D002182 3.5e-11 72.0 56 58.9
arahy.Tifrunner.gnm1.ann1.CR4GUX Arachis hypogaea HOM05D000001 ORTHO05D002182 3.5e-11 72.0 54 64.8
arahy.Tifrunner.gnm1.ann1.PL2FJ9 Arachis hypogaea HOM05D000001 ORTHO05D002182 3.5e-11 72.0 54 61.1
CsaV3_6G052190 Cucumis sativus L. HOM05D000001 ORTHO05D002182 3.5e-11 72.0 86 46.5
A08p15300 Brassica napus HOM05D000001 ORTHO05D002182 4.6e-11 71.6 51 62.7
BraA01t01189Z Brassica rapa HOM05D000001 ORTHO05D000003 4.6e-11 71.6 53 60.4
PSO675G2687 Papaver somniferum HOM05D000001 ORTHO05D002182 4.6e-11 71.6 55 65.5
Hund21554 Selenicereus undatus HOM05D000001 ORTHO05D002182 4.6e-11 71.6 58 56.9
Aa31LG6G3120 Aethionema arabicum HOM05D000001 ORTHO05D002182 6.0e-11 71.2 52 63.5
BcaNung03846 Brassica carinata HOM05D000001 ORTHO05D002182 7.8e-11 70.9 53 60.4
SGA_v2.0_scaffold1G00225 Striga asiatica HOM05D000001 ORTHO05D002182 7.8e-11 70.9 93 48.4
EL10Ac8g19611 Beta vulgaris HOM05D000001 ORTHO05D002182 1.0e-10 70.5 54 63.0
Manes.17G074900 Manihot esculenta HOM05D000001 ORTHO05D002182 1.0e-10 70.5 51 64.7
Oeu058467.1 Olea europaea HOM05D000001 ORTHO05D002182 1.0e-10 70.5 52 63.5
Cfa000874 Carpinus fangiana HOM05D000001 ORTHO05D002182 1.3e-10 70.1 56 62.5
Lalb_Chr15g0086691 Lupinus albus HOM05D000001 ORTHO05D002182 1.3e-10 70.1 55 61.8
Sabra16G0235800 Salix brachista HOM05D000001 ORTHO05D002182 1.3e-10 70.1 56 64.3
Medtr2g018880 Medicago truncatula HOM05D000001 ORTHO05D002182 1.7e-10 69.7 56 62.5
Os05g0512000 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D002182 1.7e-10 69.7 49 61.2
Rhsim13G0118700 Rhododendron simsii HOM05D000001 ORTHO05D002182 1.7e-10 69.7 56 60.7
Ah.14g086270 Amaranthus hybridus HOM05D000001 ORTHO05D002182 2.3e-10 69.3 56 64.3
BcaC01g00718 Brassica carinata HOM05D000001 ORTHO05D002182 2.3e-10 69.3 51 64.7
C03p83540 Brassica napus HOM05D000001 ORTHO05D002182 2.3e-10 69.3 51 64.7
BolC3t20635H Brassica oleracea HOM05D000001 ORTHO05D002182 2.3e-10 69.3 51 64.7
Haze_05716 Corylus avellana HOM05D000001 ORTHO05D002182 2.3e-10 69.3 56 62.5
Nitab4.5_0000315g0170 Nicotiana tabacum HOM05D000001 ORTHO05D002182 2.3e-10 69.3 57 61.4
PSO541G3782 Papaver somniferum HOM05D000001 ORTHO05D002182 2.3e-10 69.3 55 63.6
BcaC09g51263 Brassica carinata HOM05D000001 ORTHO05D002182 3.0e-10 68.9 53 58.5
C01p15010 Brassica napus HOM05D000001 ORTHO05D000003 3.0e-10 68.9 53 58.5
BolC1t01450H Brassica oleracea HOM05D000001 ORTHO05D002182 3.0e-10 68.9 53 58.5
BraA08t33507Z Brassica rapa HOM05D000001 ORTHO05D002182 3.0e-10 68.9 51 62.7
CANSAT35G0468 Cannabis sativa HOM05D000001 ORTHO05D002182 3.0e-10 68.9 57 61.4
CARHR227660 Cardamine hirsuta HOM05D000001 ORTHO05D002182 3.0e-10 68.9 52 63.5
Nn4g26648 Nelumbo nucifera HOM05D000001 ORTHO05D002182 3.0e-10 68.9 53 60.4
Sed0027382 Sechium edule HOM05D000001 ORTHO05D002182 3.0e-10 68.9 86 50.0
Aqoxy4G00106 Aquilegia oxysepala HOM05D000001 ORTHO05D002182 3.9e-10 68.6 57 57.9
Nitab4.5_0008802g0010 Nicotiana tabacum HOM05D000001 ORTHO05D002182 3.9e-10 68.6 57 61.4
PGR083G2164 Punica granatum HOM05D000001 ORTHO05D002182 3.9e-10 68.6 53 60.4
RcHm_v2.0_Chr5g0015091 Rosa chinensis HOM05D000001 ORTHO05D002182 3.9e-10 68.6 59 62.7
TAR627G0492 Trochodendron aralioides HOM05D000001 ORTHO05D002182 3.9e-10 68.6 57 57.9
Cc09_g08610 Coffea canephora HOM05D000001 ORTHO05D002182 6.6e-10 67.8 56 58.9
Potri.001G358100 Populus trichocarpa HOM05D000001 ORTHO05D002182 6.6e-10 67.8 56 55.4
FAN16G2122 Fragaria x ananassa HOM05D000001 ORTHO05D002182 1.1e-09 67.0 57 59.6
MD10G1256100 Malus domestica HOM05D000001 ORTHO05D002182 1.1e-09 67.0 51 64.7
Oeu041164.2 Olea europaea HOM05D000001 ORTHO05D002182 1.1e-09 67.0 56 57.1
GSVIVG01021576001 Vitis vinifera HOM05D000001 ORTHO05D002182 1.1e-09 67.0 54 61.1
Peaxi162Scf00045g00234 Petunia axillaris HOM05D000001 ORTHO05D002182 1.5e-09 66.6 56 60.7
A01p12430 Brassica napus HOM05D000001 ORTHO05D002182 1.9e-09 66.2 53 56.6
Ca_00519_v3 Cicer arietinum L. HOM05D000001 ORTHO05D002182 1.9e-09 66.2 56 58.9
FvH4_3g09510 Fragaria vesca HOM05D000001 ORTHO05D002182 1.9e-09 66.2 58 62.1
FAN11G1988 Fragaria x ananassa HOM05D000001 ORTHO05D002182 1.9e-09 66.2 58 62.1
Glyma.15G092000 Glycine max HOM05D000001 ORTHO05D002182 1.9e-09 66.2 60 58.3
TPR.G26230 Trifolium pratense HOM05D000001 ORTHO05D002182 1.9e-09 66.2 56 58.9
Sc17g0004770 Simmondsia chinensis HOM05D000001 ORTHO05D002182 2.5e-09 65.9 57 57.9
Actinidia23089 Actinidia chinensis HOM05D000001 ORTHO05D002182 3.3e-09 65.5 56 57.1
Glyma.13G220400 Glycine max HOM05D000001 ORTHO05D002182 3.3e-09 65.5 60 60.0
AUR62002658 Chenopodium quinoa HOM05D000001 ORTHO05D002182 5.6e-09 64.7 56 58.9
DCAR_027877 Daucus carota HOM05D000001 ORTHO05D002182 5.6e-09 64.7 56 58.9
Zm00001eb292490 Zea mays HOM05D000001 ORTHO05D002182 5.6e-09 64.7 49 57.1
Dinv21493 Davidia involucrata HOM05D000001 ORTHO05D002182 7.3e-09 64.3 53 58.5
Lalb_Chr18g0055211 Lupinus albus HOM05D000001 ORTHO05D002182 7.3e-09 64.3 55 60.0
AUR62030126 Chenopodium quinoa HOM05D000001 ORTHO05D002182 9.5e-09 63.9 56 58.9
FAN25G3090 Fragaria x ananassa HOM05D000001 ORTHO05D002182 9.5e-09 63.9 53 64.2
CAN.G36.29 Capsicum annuum HOM05D000001 ORTHO05D002182 1.2e-08 63.5 57 59.6
Sopen08g008190 Solanum pennellii HOM05D000001 ORTHO05D002182 1.2e-08 63.5 56 57.1
vmacro03421 Vaccinium macrocarpon HOM05D000001 ORTHO05D002182 1.2e-08 63.5 73 49.3
VMungo0540G0145 Vigna mungo HOM05D000413 ORTHO05D002182 1.2e-08 63.5 59 54.2
ATR1098G120 Amborella trichopoda HOM05D000001 ORTHO05D002182 1.6e-08 63.2 114 37.7
MD05G1277200 Malus domestica HOM05D000001 ORTHO05D002182 1.6e-08 63.2 56 55.4
CiPaw.09G117800 Carya illinoinensis HOM05D000001 ORTHO05D002182 2.1e-08 62.8 56 60.7
Phvul.006G167200 Phaseolus vulgaris HOM05D000001 ORTHO05D002182 2.1e-08 62.8 57 57.9
Psat1g191360 Pisum sativum HOM05D000001 ORTHO05D002182 2.1e-08 62.8 55 56.4
CSS0005660 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 2.8e-08 62.4 56 55.4
CSS0040764 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 2.8e-08 62.4 56 55.4
FAN21G2407 Fragaria x ananassa HOM05D000001 ORTHO05D002182 3.6e-08 62.0 58 60.3
ECA236G0529 Erigeron canadensis HOM05D000001 ORTHO05D002182 4.7e-08 61.6 51 54.9
Lj1C1167T9 Lonicera japonica HOM05D000001 ORTHO05D002182 6.2e-08 61.2 56 53.6
PGSC0003DMG400005381 Solanum tuberosum HOM05D000001 ORTHO05D002182 8.1e-08 60.8 57 56.1
Thhalv10024364m.g Eutrema salsugineum HOM05D000001 ORTHO05D002182 1.4e-07 60.1 33 72.7
Lj6g0021423 Lotus japonicus HOM05D000001 ORTHO05D002182 1.8e-07 59.7 52 57.7
Migut.M01869 Erythranthe guttata HOM05D000001 ORTHO05D002182 2.3e-07 59.3 79 45.6
SEGI_28504 Sequoiadendron giganteum HOM05D000001 ORTHO05D002182 3.1e-07 58.9 53 58.5
arahy.Tifrunner.gnm1.ann1.H34G6K Arachis hypogaea HOM05D000001 ORTHO05D002182 1.2e-06 57.0 50 56.0
HanXRQChr04g0112101 Helianthus annuus HOM05D000001 ORTHO05D002182 1.2e-06 57.0 52 53.8
Lsat_1_v5_gn_7_32301 Lactuca sativa HOM05D000001 ORTHO05D002182 2.6e-06 55.8 50 62.0
Hma1.2p1_0689F.1_g203780 Hydrangea macrophylla HOM05D000001 ORTHO05D002182 7.6e-06 54.3 32 75.0


User provided reference genes

Program Settings