Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.118 Carica papaya HOM05D001717 ORTHO05D027502 3.2e-53 211.5 105 100.0
Cpa.g.sc28.134 Carica papaya HOM05D001717 ORTHO05D007217 3.5e-23 111.7 87 65.5
TWI34G1733 Tripterygium wilfordii HOM05D001717 ORTHO05D007217 2.8e-17 92.0 87 56.3
vmacro06304 Vaccinium macrocarpon HOM05D001717 ORTHO05D007217 9.1e-16 87.0 113 46.9
Duzib187G0409 Durio zibethinus HOM05D001717 ORTHO05D007217 3.5e-15 85.1 89 56.2
CSS0031227 Camellia sinensis var. sinensis HOM05D001717 ORTHO05D007217 1.3e-14 83.2 109 45.9
COL.COLO4_18171 Corchorus olitorius HOM05D001717 ORTHO05D007217 2.2e-14 82.4 89 52.8
Thecc.09G084800 Theobroma cacao HOM05D001717 ORTHO05D007217 2.2e-14 82.4 89 51.7
Dinv36788 Davidia involucrata HOM05D001717 ORTHO05D007217 5.0e-14 81.3 91 52.7
Dinv42343 Davidia involucrata HOM05D001717 ORTHO05D007217 8.5e-14 80.5 109 47.7
Hma1.2p1_0672F.1_g200970 Hydrangea macrophylla HOM05D001717 ORTHO05D007217 3.2e-13 78.6 92 48.9
Actinidia38458 Actinidia chinensis HOM05D001717 ORTHO05D007217 4.2e-13 78.2 93 48.4
THA.LOC104811752 Tarenaya hassleriana HOM05D001717 ORTHO05D007217 5.5e-13 77.8 92 50.0
Actinidia29912 Actinidia chinensis HOM05D001717 ORTHO05D007217 4.7e-12 74.7 111 43.2
TAR626G1800 Trochodendron aralioides HOM05D001717 ORTHO05D007217 4.7e-12 74.7 91 49.5
AL8G32930 Arabidopsis lyrata HOM05D001717 ORTHO05D007217 6.1e-12 74.3 91 48.4
Lj6g0021332 Lotus japonicus HOM05D001717 ORTHO05D007217 1.0e-11 73.6 80 52.5
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.4e-11 73.2 90 48.9
Gorai.001G012900 Gossypium raimondii HOM05D001717 ORTHO05D007217 1.4e-11 73.2 90 48.9
Rhsim03G0231100 Rhododendron simsii HOM05D001717 ORTHO05D007217 1.8e-11 72.8 83 47.0
Sp6g18740 Schrenkiella parvula HOM05D001717 ORTHO05D007217 1.8e-11 72.8 92 45.7
Medtr2g040060 Medicago truncatula HOM05D001717 ORTHO05D007217 4.0e-11 71.6 75 50.7
AT5G57030 Arabidopsis thaliana HOM05D001717 ORTHO05D007217 6.8e-11 70.9 91 45.1
Atru.chr7.1632 Acer truncatum HOM05D001717 ORTHO05D007217 8.8e-11 70.5 101 45.5
Gohir.D05G032700 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.5e-10 69.7 57 59.6
Gorai.009G032900 Gossypium raimondii HOM05D001717 ORTHO05D007217 1.5e-10 69.7 57 59.6
Manes.16G099600 Manihot esculenta HOM05D001717 ORTHO05D007217 2.6e-10 68.9 89 47.2
CAN.G1583.7 Capsicum annuum HOM05D001717 ORTHO05D007217 3.4e-10 68.6 87 47.1
Gohir.A05G031300 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.4e-10 68.6 57 57.9
Gohir.A07G012400 Gossypium hirsutum HOM05D001717 ORTHO05D007217 4.4e-10 68.2 90 46.7
Migut.L01523 Erythranthe guttata HOM05D001717 ORTHO05D007217 5.7e-10 67.8 91 44.0
FAN23G2221 Fragaria x ananassa HOM05D001717 ORTHO05D007217 7.5e-10 67.4 67 56.7
FAN26G1636 Fragaria x ananassa HOM05D001717 ORTHO05D007217 9.8e-10 67.0 66 56.1
FAN26G2680 Fragaria x ananassa HOM05D001717 ORTHO05D007217 9.8e-10 67.0 66 56.1
QL02p062060 Quercus lobata HOM05D001717 ORTHO05D007217 9.8e-10 67.0 92 43.5
Glyma.15G172200 Glycine max HOM05D001717 ORTHO05D007217 1.7e-09 66.2 59 57.6
arahy.Tifrunner.gnm1.ann1.1PI95V Arachis hypogaea HOM05D001717 ORTHO05D007217 2.2e-09 65.9 50 64.0
MSTRG.26445 Avicennia marina HOM05D001717 ORTHO05D007217 2.2e-09 65.9 62 59.7
Carub.0008s1753 Capsella rubella HOM05D001717 ORTHO05D007217 2.2e-09 65.9 92 43.5
CARHR270780 Cardamine hirsuta HOM05D001717 ORTHO05D007217 2.2e-09 65.9 91 44.0
A10p14350 Brassica napus HOM05D001717 ORTHO05D007217 2.8e-09 65.5 89 40.4
Eucgr.C03415 Eucalyptus grandis HOM05D001717 ORTHO05D007217 2.8e-09 65.5 74 48.6
FvH4_1g07950 Fragaria vesca HOM05D001717 ORTHO05D007217 2.8e-09 65.5 66 56.1
FAN19G0647 Fragaria x ananassa HOM05D001717 ORTHO05D007217 2.8e-09 65.5 66 56.1
FAN28G1754 Fragaria x ananassa HOM05D001717 ORTHO05D007217 2.8e-09 65.5 66 54.5
Nn8g38788 Nelumbo nucifera HOM05D001717 ORTHO05D007217 2.8e-09 65.5 65 50.8
arahy.Tifrunner.gnm1.ann1.HJX0E8 Arachis hypogaea HOM05D001717 ORTHO05D007217 3.7e-09 65.1 53 60.4
BraA10t43526Z Brassica rapa HOM05D001717 ORTHO05D007217 3.7e-09 65.1 89 39.3
Lalb_Chr08g0232411 Lupinus albus HOM05D001717 ORTHO05D007217 3.7e-09 65.1 74 51.4
Nitab4.5_0002824g0130 Nicotiana tabacum HOM05D001717 ORTHO05D007217 4.9e-09 64.7 88 46.6
Thhalv10013234m.g Eutrema salsugineum HOM05D001717 ORTHO05D007217 6.3e-09 64.3 92 41.3
Phvul.009G230300 Phaseolus vulgaris HOM05D001717 ORTHO05D007217 6.3e-09 64.3 75 44.0
VMungo1309G2997 Vigna mungo HOM05D001717 ORTHO05D007217 6.3e-09 64.3 75 45.3
BcaB05g22312 Brassica carinata HOM05D001717 ORTHO05D007217 1.1e-08 63.5 93 41.9
C03p15210 Brassica napus HOM05D001717 ORTHO05D007217 1.1e-08 63.5 93 41.9
TPR.G29491 Trifolium pratense HOM05D001717 ORTHO05D007217 1.1e-08 63.5 53 58.5
PGSC0003DMG400000333 Solanum tuberosum HOM05D001717 ORTHO05D007217 1.8e-08 62.8 89 41.6
BcaC04g20021 Brassica carinata HOM05D001717 ORTHO05D007217 2.4e-08 62.4 92 38.0
C09p48690 Brassica napus HOM05D001717 ORTHO05D007217 2.4e-08 62.4 92 38.0
Prupe.7G205600 Prunus persica HOM05D001717 ORTHO05D007217 2.4e-08 62.4 96 41.7
SalBow1G4112 Salvia bowleyana HOM05D001717 ORTHO05D007217 2.4e-08 62.4 96 41.7
Aa31LG3G12920 Aethionema arabicum HOM05D001717 ORTHO05D007217 3.1e-08 62.0 89 43.8
BolC3t13962H Brassica oleracea HOM05D001717 ORTHO05D007217 4.1e-08 61.6 93 40.9
Glyma.09G066200 Glycine max HOM05D001717 ORTHO05D007217 4.1e-08 61.6 51 58.8
Psat1g140400 Pisum sativum HOM05D001717 ORTHO05D007217 4.1e-08 61.6 79 46.8
Solyc12g008980.3 Solanum lycopersicum HOM05D001717 ORTHO05D007217 4.1e-08 61.6 89 43.8
Sopen12g003910 Solanum pennellii HOM05D001717 ORTHO05D007217 4.1e-08 61.6 89 43.8
Ciclev10008410m.g Citrus clementina HOM05D001717 ORTHO05D007217 9.2e-08 60.5 93 45.2
Peaxi162Scf00498g00430 Petunia axillaris HOM05D001717 ORTHO05D007217 9.2e-08 60.5 64 48.4
SGA_v2.0_scaffold21G09418 Striga asiatica HOM05D001717 ORTHO05D007217 9.2e-08 60.5 60 56.7
A03p13030 Brassica napus HOM05D001717 ORTHO05D007217 1.6e-07 59.7 96 40.6
Lj4A290G39 Lonicera japonica HOM05D001717 ORTHO05D007217 1.6e-07 59.7 90 41.1
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 2.7e-07 58.9 69 49.3
CANSAT37G0002 Cannabis sativa HOM05D001717 ORTHO05D007217 3.5e-07 58.5 61 52.5
BcaB08g36016 Brassica carinata HOM05D001717 ORTHO05D007217 5.9e-07 57.8 57 49.1
BolC9t57717H Brassica oleracea HOM05D001717 ORTHO05D007217 5.9e-07 57.8 94 39.4
BraA03t10613Z Brassica rapa HOM05D001717 ORTHO05D007217 5.9e-07 57.8 97 40.2
Ca_13129_v3 Cicer arietinum L. HOM05D001717 ORTHO05D007217 5.9e-07 57.8 75 44.0
Haze_25942 Corylus avellana HOM05D001717 ORTHO05D007217 5.9e-07 57.8 69 49.3
MD02G1083500 Malus domestica HOM05D001717 ORTHO05D007217 5.9e-07 57.8 93 43.0
unitig_899.g15176 Utricularia gibba HOM05D001717 ORTHO05D007217 5.9e-07 57.8 56 55.4
Oeu051301.2 Olea europaea HOM05D001717 ORTHO05D007217 7.7e-07 57.4 56 51.8
BcaB01g04439 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-06 56.6 98 38.8
BcaB08g36018 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-06 56.6 98 38.8
BcaB08g36021 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-06 56.6 98 38.8
BcaB08g36024 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-06 56.6 98 38.8
C04p33600 Brassica napus HOM05D001717 ORTHO05D027502 1.3e-06 56.6 66 43.9
RcHm_v2.0_Chr2g0093831 Rosa chinensis HOM05D001717 ORTHO05D007217 1.3e-06 56.6 65 47.7
CiPaw.04G147700 Carya illinoinensis HOM05D001717 ORTHO05D007217 2.3e-06 55.8 90 37.8
Aqoxy7G01155 Aquilegia oxysepala HOM05D001717 ORTHO05D007217 2.9e-06 55.5 48 54.2
ClCG11G001670 Citrullus lanatus HOM05D001717 ORTHO05D007217 3.8e-06 55.1 53 47.2
MELO3C004633.2 Cucumis melo HOM05D001717 ORTHO05D007217 3.8e-06 55.1 53 47.2
CsaV3_2G001370 Cucumis sativus L. HOM05D001717 ORTHO05D007217 3.8e-06 55.1 53 47.2
Nitab4.5_0002642g0140 Nicotiana tabacum HOM05D001717 ORTHO05D007217 3.8e-06 55.1 95 40.0
BcaC02g10042 Brassica carinata HOM05D001717 ORTHO05D027502 6.6e-06 54.3 50 46.0
BolC4t24928H Brassica oleracea HOM05D001717 ORTHO05D027502 6.6e-06 54.3 58 48.3


User provided reference genes

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