Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc166.11 Carica papaya HOM05D003302 ORTHO05D003785 5.3e-162 574.3 296 100.0
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 1.9e-90 336.7 295 64.1
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 1.6e-89 333.6 288 61.5
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 4.6e-89 332.0 267 61.8
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 1.5e-87 327.0 289 64.0
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.9e-87 326.6 289 59.2
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 1.9e-87 326.6 292 61.3
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 9.6e-87 324.3 299 62.2
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 1.3e-86 323.9 280 61.1
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 2.1e-86 323.2 288 59.4
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.1e-86 323.2 291 58.1
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 3.6e-86 322.4 265 65.7
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 4.8e-86 322.0 262 64.9
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 6.2e-86 321.6 275 62.2
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 5.3e-85 318.5 262 64.1
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 9.9e-84 314.3 268 61.9
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 2.2e-83 313.2 300 59.7
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 4.9e-83 312.0 290 58.6
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 6.4e-83 311.6 282 60.3
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 6.4e-83 311.6 293 58.7
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 1.1e-82 310.8 290 60.0
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 1.1e-82 310.8 293 58.7
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 3.2e-82 309.3 284 59.2
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 3.2e-82 309.3 299 58.5
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 7.1e-82 308.1 263 61.2
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 7.1e-82 308.1 295 59.0
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 7.1e-82 308.1 291 58.1
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 7.1e-82 308.1 292 58.6
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 1.2e-81 307.4 292 56.8
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 2.1e-81 306.6 255 63.9
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 4.6e-81 305.4 263 61.2
SGA_v2.0_scaffold1G00170 Striga asiatica HOM05D003302 ORTHO05D003785 4.6e-81 305.4 290 56.6
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 1.0e-80 304.3 265 60.8
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 1.8e-80 303.5 303 57.1
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.1e-79 300.8 299 54.8
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 1.5e-79 300.4 291 57.0
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 1.5e-79 300.4 299 56.5
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 9.6e-79 297.7 291 56.0
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 4.8e-78 295.4 303 55.1
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 1.8e-77 293.5 303 55.4
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 2.4e-77 293.1 265 58.9
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 3.1e-77 292.7 303 53.8
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 3.1e-77 292.7 307 53.1
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 1.2e-76 290.8 267 58.8
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 2.6e-76 289.7 261 59.0
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 2.6e-76 289.7 261 59.0
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 2.6e-76 289.7 261 59.0
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 2.6e-76 289.7 296 54.1
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 9.9e-76 287.7 294 55.1
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 9.9e-76 287.7 298 54.4
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 2.4e-74 283.1 293 53.6
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 1.2e-73 280.8 297 53.2
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 1.2e-73 280.8 303 53.5
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 2.1e-73 280.0 284 53.2
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 7.4e-71 271.6 274 53.6
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 7.4e-71 271.6 253 57.3
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 3.7e-70 269.2 259 57.1
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 4.8e-70 268.9 253 58.1
EL10Ac4g07785 Beta vulgaris HOM05D003302 ORTHO05D003785 1.1e-69 267.7 273 54.2
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 1.4e-69 267.3 292 51.4
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 1.8e-69 266.9 319 48.9
Lsat_1_v5_gn_8_116740 Lactuca sativa HOM05D003302 ORTHO05D003785 2.4e-69 266.5 292 52.4
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 3.4e-68 262.7 301 51.8
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 4.5e-68 262.3 293 51.2
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 7.6e-68 261.5 269 55.4
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 2.9e-67 259.6 288 50.7
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 3.8e-67 259.2 257 53.7
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 8.4e-67 258.1 258 53.9
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 4.2e-66 255.8 262 53.4
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 6.7e-64 248.4 250 52.4
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 9.6e-63 244.6 251 54.2
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 9.6e-63 244.6 251 51.8
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 1.1e-61 241.1 251 50.2
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 3.4e-60 236.1 274 48.9
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.9e-58 230.3 257 49.8
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 4.2e-58 229.2 257 49.0
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 2.1e-57 226.9 234 50.9
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.6e-57 226.1 288 46.5
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 8.7e-56 221.5 250 50.0
MD10G1262600 Malus domestica HOM05D003302 ORTHO05D003785 1.1e-55 221.1 147 72.8
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 7.4e-55 218.4 256 46.5
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 9.7e-55 218.0 234 48.7
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 2.2e-54 216.9 225 47.6
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 2.8e-54 216.5 256 46.1
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 4.8e-54 215.7 248 46.0
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 6.3e-54 215.3 266 45.5
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 1.1e-53 214.5 255 46.3
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 1.1e-53 214.5 257 45.1
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.4e-53 214.2 249 45.8
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 1.4e-53 214.2 289 42.2
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 1.4e-53 214.2 289 42.2
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 3.1e-53 213.0 217 50.7
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 3.1e-53 213.0 256 44.9
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 3.1e-53 213.0 261 44.8
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 4.1e-53 212.6 256 45.7
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 4.1e-53 212.6 248 46.0
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 4.1e-53 212.6 248 45.2
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 5.3e-53 212.2 256 43.8
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 5.3e-53 212.2 248 45.2
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 5.3e-53 212.2 256 44.5
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 6.9e-53 211.8 261 44.1
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 9.1e-53 211.5 256 44.1
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 9.1e-53 211.5 256 44.9
CDE12G0679 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 1.5e-52 210.7 264 44.3
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 1.5e-52 210.7 248 46.0
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 2.0e-52 210.3 217 49.8
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 2.0e-52 210.3 256 44.9
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 2.6e-52 209.9 248 44.8
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 2.6e-52 209.9 266 44.0
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 3.4e-52 209.5 256 44.5
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 3.4e-52 209.5 285 41.1
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 4.5e-52 209.1 252 44.4
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.9e-52 208.8 286 42.0
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 5.9e-52 208.8 257 44.0
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 7.7e-52 208.4 265 43.0
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 7.7e-52 208.4 271 45.4
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 7.7e-52 208.4 256 44.5
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 7.7e-52 208.4 256 44.1
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 7.7e-52 208.4 217 48.4
CDE06G1020 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 1.0e-51 208.0 247 46.6
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 1.0e-51 208.0 286 42.0
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.0e-51 208.0 286 42.0
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 1.0e-51 208.0 284 43.0
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 1.0e-51 208.0 267 45.7
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 1.3e-51 207.6 217 48.8
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 1.3e-51 207.6 233 45.5
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 1.3e-51 207.6 217 47.0
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 1.3e-51 207.6 249 45.8
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 1.7e-51 207.2 233 45.9
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 1.7e-51 207.2 217 48.4
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 2.9e-51 206.5 265 43.8
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 2.9e-51 206.5 248 44.8
MD06G1041700 Malus domestica HOM05D003302 ORTHO05D003785 2.9e-51 206.5 249 44.2
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 6.5e-51 205.3 262 43.5
FAN04G1622 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.5e-51 204.9 286 40.9
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.5e-51 204.9 286 41.3
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 1.1e-50 204.5 230 44.8
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 1.9e-50 203.8 283 42.8
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 2.5e-50 203.4 248 46.0
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 2.5e-50 203.4 295 41.0
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 3.2e-50 203.0 249 44.6
EL10Ac8g19691 Beta vulgaris HOM05D003302 ORTHO05D003785 3.2e-50 203.0 303 44.9
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 3.2e-50 203.0 248 44.0
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 9.4e-50 201.4 283 43.1
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 1.2e-49 201.1 248 44.0
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 1.6e-49 200.7 283 42.8
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 4.6e-49 199.1 283 43.5
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 6.1e-49 198.7 256 43.4
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 6.1e-49 198.7 243 43.2
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 7.9e-49 198.4 225 44.0
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 1.0e-48 198.0 233 46.4
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 1.8e-48 197.2 255 43.5
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 1.5e-47 194.1 245 44.1
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 3.3e-47 193.0 287 42.2
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 3.3e-47 193.0 201 49.3
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 4.4e-47 192.6 232 45.7
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 5.7e-47 192.2 248 43.1
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 7.4e-47 191.8 224 48.2
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 1.3e-46 191.0 232 45.7
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 1.7e-46 190.7 232 45.3
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.7e-46 190.7 252 45.6
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 2.2e-46 190.3 211 45.0
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 2.2e-46 190.3 221 48.4
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 1.4e-45 187.6 214 43.9
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 2.4e-45 186.8 278 39.9
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 2.6e-44 183.3 232 45.3
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 2.2e-43 180.3 176 51.7
Actinidia25937 Actinidia chinensis HOM05D003302 ORTHO05D003785 2.6e-36 156.8 148 53.4
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 2.9e-35 153.3 188 43.6
Rhsim11G0009600 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.5e-31 141.0 231 36.8
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.5e-28 129.4 146 47.9
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 5.0e-27 125.9 119 57.1
ATR0665G386 Amborella trichopoda HOM05D003302 ORTHO05D003785 1.9e-26 124.0 98 59.2
Dinv32258 Davidia involucrata HOM05D003302 ORTHO05D003785 9.4e-26 121.7 82 68.3
CAN.G572.51 Capsicum annuum HOM05D003302 ORTHO05D003785 1.5e-23 114.4 262 33.6
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 5.7e-23 112.5 265 30.6
Nn6g33800 Nelumbo nucifera HOM05D003302 ORTHO05D003785 8.6e-19 98.6 114 48.2
RhsimUnG0048900 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.4e-15 86.7 248 28.6
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 8.0e-09 65.5 90 38.9
Nn6g33799 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.4e-08 64.7 100 38.0
Pp3c20_1870 Physcomitrium patens HOM05D003302 ORTHO05D003785 3.0e-08 63.5 90 34.4
arahy.Tifrunner.gnm1.ann1.G4BUBZ Arachis hypogaea HOM05D003302 ORTHO05D003785 8.3e-06 55.5 44 54.5


User provided reference genes

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