Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 8.1e-18 92.8 51 100.0
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 4.4e-16 87.0 50 96.0
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 5.8e-16 86.7 50 94.0
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 7.6e-16 86.3 50 96.0
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 9.9e-16 85.9 50 94.0
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 9.9e-16 85.9 51 92.2
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 9.9e-16 85.9 50 94.0
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 9.9e-16 85.9 50 94.0
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 9.9e-16 85.9 50 94.0
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 9.9e-16 85.9 50 94.0
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 9.9e-16 85.9 50 94.0
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.3e-15 85.5 51 90.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.3e-15 85.5 50 94.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.7e-15 85.1 50 94.0
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.7e-15 85.1 50 94.0
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.7e-15 85.1 50 94.0
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.2e-15 84.7 50 94.0
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.2e-15 84.7 50 94.0
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.2e-15 84.7 50 92.0
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.9e-15 84.3 50 92.0
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.9e-15 84.3 50 90.0
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.9e-15 84.3 50 90.0
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.8e-15 84.0 50 92.0
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 92.0
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.9e-15 83.6 49 91.8
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 92.0
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 92.0
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 92.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 90.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 4.9e-15 83.6 50 90.0
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 6.4e-15 83.2 47 91.5
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.4e-15 83.2 50 90.0
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.4e-15 83.2 50 90.0
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.4e-15 83.2 50 90.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 6.4e-15 83.2 50 90.0
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 6.4e-15 83.2 50 90.0
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 8.4e-15 82.8 47 93.6
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 8.4e-15 82.8 47 93.6
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 8.4e-15 82.8 50 92.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 8.4e-15 82.8 50 92.0
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.1e-14 82.4 50 86.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.1e-14 82.4 50 86.0
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.1e-14 82.4 47 91.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.1e-14 82.4 49 91.8
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.4e-14 82.0 47 93.6
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.4e-14 82.0 46 93.5
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.4e-14 82.0 48 93.8
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.4e-14 82.0 48 93.8
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.9e-14 81.6 50 90.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.9e-14 81.6 50 90.0
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.9e-14 81.6 50 90.0
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.9e-14 81.6 50 90.0
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.4e-14 81.3 49 89.8
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 3.2e-14 80.9 50 84.0
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.2e-14 80.9 50 86.0
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.2e-14 80.9 50 88.0
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.2e-14 80.9 50 90.0
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 3.2e-14 80.9 50 88.0
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 3.2e-14 80.9 49 87.8
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 4.2e-14 80.5 48 91.7
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 4.2e-14 80.5 48 91.7
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 4.2e-14 80.5 50 88.0
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 5.4e-14 80.1 50 88.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 5.4e-14 80.1 49 87.8
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.4e-14 80.1 46 91.3
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 7.1e-14 79.7 50 88.0
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 7.1e-14 79.7 50 88.0
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 7.1e-14 79.7 47 89.4
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 7.1e-14 79.7 47 87.2
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 7.1e-14 79.7 47 87.2
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 7.1e-14 79.7 47 89.4
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 7.1e-14 79.7 49 87.8
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 7.1e-14 79.7 50 86.0
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 9.2e-14 79.3 48 89.6
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 9.2e-14 79.3 48 89.6
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 9.2e-14 79.3 47 87.2
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 9.2e-14 79.3 46 91.3
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 9.2e-14 79.3 48 89.6
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 9.2e-14 79.3 48 89.6
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 9.2e-14 79.3 47 87.2
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.2e-13 79.0 47 89.4
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.2e-13 79.0 46 89.1
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.2e-13 79.0 46 89.1
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.6e-13 78.6 47 87.2
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.6e-13 78.6 50 82.0
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.6e-13 78.6 48 87.5
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.6e-13 78.6 47 89.4
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.1e-13 78.2 47 85.1
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.1e-13 78.2 50 84.0
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.1e-13 78.2 48 87.5
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.7e-13 77.8 47 87.2
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.5e-13 77.4 47 87.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 3.5e-13 77.4 46 89.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 3.5e-13 77.4 50 82.0
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.6e-13 77.0 46 89.1
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 4.6e-13 77.0 46 89.1
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 4.6e-13 77.0 47 87.2
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 6.0e-13 76.6 46 87.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 6.0e-13 76.6 51 80.4
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 6.0e-13 76.6 46 87.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.8e-13 76.3 50 84.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 7.8e-13 76.3 47 83.0
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.8e-13 76.3 47 87.2
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 1.0e-12 75.9 46 87.0
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.0e-12 75.9 46 87.0
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.3e-12 75.5 46 87.0
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-12 75.5 46 87.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-12 75.5 46 87.0
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-12 75.5 46 87.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 1.7e-12 75.1 46 87.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.3e-12 74.7 46 84.8
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 3.0e-12 74.3 43 88.4
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.0e-12 74.3 46 84.8
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.9e-12 73.9 46 84.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 3.9e-12 73.9 50 82.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 5.1e-12 73.6 46 84.8
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.7e-12 72.8 47 80.9
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.1e-11 72.4 51 78.4
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.9e-11 71.6 46 82.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.3e-11 70.5 46 80.4
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 4.3e-11 70.5 46 80.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 5.6e-11 70.1 48 77.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 8.1e-10 66.2 46 73.9
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.1e-09 64.3 44 75.0
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.1e-09 64.3 47 78.7
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 5.3e-09 63.5 50 76.0
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.0e-08 61.6 46 69.6
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.6e-08 61.2 48 66.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.4e-08 60.8 48 64.6
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 9.9e-08 59.3 50 72.0
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 2.9e-07 57.8 50 74.0


User provided reference genes

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