Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 6.9e-151 537.7 371 100.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.2e-115 420.6 374 70.3
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.4e-114 417.2 374 84.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.2e-114 415.2 374 84.8
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 5.2e-114 415.2 374 84.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 8.8e-114 414.5 373 84.2
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 2.2e-112 409.8 375 69.1
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.8e-112 409.5 375 82.4
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 4.8e-112 408.7 374 84.0
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.1e-111 406.0 373 83.1
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.1e-111 406.0 374 80.5
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 9.1e-111 404.4 376 79.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.0e-109 401.0 375 82.1
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.6e-107 393.7 370 81.4
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.1e-107 393.3 375 78.4
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 5.2e-106 388.7 372 79.3
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.2e-105 387.5 376 71.0
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.4e-105 385.6 376 81.6
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 9.8e-105 384.4 374 78.6
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 4.9e-104 382.1 373 79.9
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 8.3e-104 381.3 374 77.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 9.2e-103 377.9 373 67.3
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 3.5e-102 375.9 375 81.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.0e-101 374.4 402 64.2
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.0e-101 374.4 378 76.7
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.3e-101 373.2 374 77.0
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.3e-101 373.2 378 80.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.8e-101 372.5 374 76.7
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.5e-100 370.5 376 77.1
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 3.3e-100 369.4 376 77.9
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.3e-100 369.4 375 79.2
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.3e-100 369.0 397 73.3
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 4.7e-99 365.5 377 78.2
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 5.2e-98 362.1 371 76.3
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.6e-97 359.8 378 74.1
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.6e-97 359.8 378 74.1
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 5.7e-97 358.6 374 77.3
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 5.7e-97 358.6 384 77.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.9e-96 355.5 374 77.0
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 2.4e-95 353.2 377 75.1
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.4e-95 353.2 363 69.4
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 3.2e-95 352.8 374 77.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 9.2e-95 351.3 373 76.1
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.6e-94 350.5 376 74.7
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.6e-94 350.5 377 74.5
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 7.8e-94 348.2 377 74.0
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.0e-93 347.8 384 74.2
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-92 344.0 383 77.3
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.3e-92 342.8 363 76.0
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.2e-91 340.9 374 74.9
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.6e-91 340.5 372 71.8
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.6e-91 339.3 373 74.8
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.2e-91 338.6 369 76.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.0e-90 335.9 372 72.6
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.0e-89 333.6 347 78.1
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 5.8e-89 332.0 374 72.5
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.3e-88 330.9 367 70.3
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.2e-88 330.1 374 73.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.2e-87 326.2 385 71.2
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 4.1e-87 325.9 384 69.5
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 4.1e-87 325.9 382 74.9
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 3.5e-86 322.8 381 74.0
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 4.6e-86 322.4 361 74.8
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 7.8e-86 321.6 381 72.2
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.5e-84 317.4 328 71.6
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 3.3e-84 316.2 343 70.3
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 4.3e-84 315.8 376 70.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 9.5e-84 314.7 342 73.7
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.6e-83 313.9 488 42.6
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.6e-83 312.8 382 72.3
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 6.2e-83 312.0 380 71.3
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 8.9e-82 308.1 382 72.3
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.2e-81 307.8 383 68.1
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.4e-81 306.2 380 66.3
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 5.8e-81 305.4 383 67.9
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 5.8e-81 305.4 383 67.9
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.7e-80 303.9 374 68.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 1.9e-79 300.4 348 78.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.2e-79 299.7 376 66.8
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 5.4e-79 298.9 385 72.2
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 7.1e-79 298.5 348 77.9
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-77 294.3 371 68.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.9e-76 290.4 358 69.6
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 3.3e-76 289.7 385 67.5
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 8.1e-75 285.0 369 67.5
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 8.1e-75 285.0 356 70.8
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.1e-74 283.1 365 66.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 4.0e-74 282.7 367 65.7
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.2e-73 281.2 334 73.7
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.0e-73 280.4 375 66.1
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.9e-72 276.6 391 65.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 4.9e-72 275.8 381 57.0
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 8.4e-72 275.0 380 58.9
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 5.4e-71 272.3 376 65.7
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.2e-70 271.2 365 65.8
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.3e-69 266.9 382 63.6
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.5e-68 263.5 379 66.2
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.1e-66 258.1 381 45.7
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.4e-66 257.7 368 67.7
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-66 257.7 349 67.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.0e-65 253.8 379 66.0
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.7e-64 250.8 364 63.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.4e-63 245.7 278 74.1
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.1e-59 233.8 320 71.2
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.1e-59 233.8 183 69.4
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 1.4e-58 231.1 319 69.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.3e-58 229.2 328 69.5
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.3e-56 224.6 360 61.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.1e-55 221.5 337 67.7
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 3.2e-55 219.9 271 71.6
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.5e-49 201.1 311 65.3
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 6.4e-48 195.7 367 59.1
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.9e-47 194.1 342 59.9
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 7.1e-47 192.2 168 63.7
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 9.3e-47 191.8 183 59.6
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 3.5e-46 189.9 308 64.6
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.1e-44 184.9 132 87.9
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.1e-44 184.9 376 53.2
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-39 168.3 132 75.8
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.2e-39 166.8 132 75.8
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 7.1e-39 165.6 174 54.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 7.9e-38 162.2 313 56.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.3e-37 160.6 300 59.0
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.3e-37 160.6 367 50.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.0e-29 135.2 357 51.8
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.7e-29 132.5 132 64.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.5e-25 121.3 171 42.1
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.0e-24 118.6 254 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.9e-24 117.1 240 61.2
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 2.9e-24 117.1 115 63.5
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.1e-21 106.3 84 63.1
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.4e-20 103.2 407 45.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.2e-17 95.1 226 54.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.1e-14 82.8 58 89.7
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.0e-13 82.0 56 92.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 5.2e-13 79.7 56 91.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-09 68.6 84 66.7


User provided reference genes

Program Settings