Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.2e-127 459.9 233 100.0
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 3.7e-110 401.7 233 82.8
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 2.4e-109 399.1 233 81.5
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 7.0e-109 397.5 233 82.0
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 2.0e-108 396.0 233 81.5
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 7.8e-108 394.0 233 81.1
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 1.7e-107 392.9 233 81.1
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 8.6e-107 390.6 233 80.3
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 8.6e-107 390.6 233 80.3
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 3.3e-106 388.7 233 80.3
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.3e-106 388.7 233 79.4
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 5.6e-106 387.9 233 79.0
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.4
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 79.8
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 7.3e-106 387.5 233 77.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 2.1e-105 386.0 233 79.4
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 2.1e-105 386.0 233 77.7
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.8e-105 385.6 233 82.0
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 4.7e-105 384.8 233 78.1
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 6.1e-105 384.4 233 78.5
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 6.1e-105 384.4 233 80.3
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 8.0e-105 384.0 233 78.5
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.4e-104 383.3 233 77.3
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.3e-104 382.5 233 80.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 3.0e-104 382.1 233 79.0
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 4.0e-104 381.7 233 79.0
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.0e-104 381.7 234 76.9
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 4.0e-104 381.7 234 76.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 4.0e-104 381.7 233 78.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 5.2e-104 381.3 233 79.4
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 6.8e-104 380.9 233 76.4
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 6.8e-104 380.9 233 77.7
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.8e-104 380.9 233 79.8
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 8.9e-104 380.6 233 80.3
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 8.9e-104 380.6 241 77.2
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 1.5e-103 379.8 233 79.8
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 2.0e-103 379.4 233 76.8
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-103 379.0 233 79.0
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.6e-103 379.0 233 76.8
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 4.4e-103 378.3 233 77.7
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 5.7e-103 377.9 233 78.1
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 7.5e-103 377.5 233 75.5
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 7.5e-103 377.5 233 75.5
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 7.5e-103 377.5 233 76.4
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 7.5e-103 377.5 233 77.3
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-102 376.7 233 79.4
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-102 376.7 233 79.4
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.7e-102 376.3 233 77.7
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 1.7e-102 376.3 233 76.0
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 2.2e-102 375.9 233 78.1
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.9e-102 375.6 233 75.1
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 2.9e-102 375.6 243 74.1
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 3.7e-102 375.2 233 75.5
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.9e-102 374.8 233 75.5
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.9e-102 374.8 233 75.5
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 6.4e-102 374.4 233 80.3
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 1.1e-101 373.6 233 76.0
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 2.4e-101 372.5 239 77.0
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 2.4e-101 372.5 233 77.7
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 9.2e-101 370.5 236 76.7
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 2.0e-100 369.4 233 76.4
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 2.7e-100 369.0 233 74.7
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 7.8e-100 367.5 233 75.5
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.0e-99 367.1 219 78.1
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 1.3e-99 366.7 242 72.7
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 5.0e-99 364.8 234 74.8
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.6e-99 364.0 219 80.8
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 1.5e-98 363.2 233 74.2
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.5e-98 363.2 233 73.8
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 1.9e-98 362.8 259 71.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.5e-98 362.5 218 80.7
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 4.3e-98 361.7 233 76.4
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 4.3e-98 361.7 233 73.8
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 7.3e-98 360.9 218 80.3
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.2e-97 357.8 233 74.7
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.8e-96 356.3 220 77.7
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.8e-96 356.3 257 68.1
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.1e-96 355.5 233 72.5
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 4.0e-96 355.1 234 73.9
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.2e-95 353.6 221 77.4
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 4.4e-95 351.7 233 71.7
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 9.8e-95 350.5 233 71.2
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.9e-94 349.0 256 67.6
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 2.9e-94 349.0 233 71.2
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 6.4e-94 347.8 233 71.2
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 4.1e-93 345.1 233 71.7
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 9.2e-93 344.0 234 71.8
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.2e-92 343.6 233 70.4
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.1e-88 330.5 214 73.4
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 3.1e-88 328.9 216 71.8
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 5.2e-88 328.2 200 79.0
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.6e-87 325.9 261 61.7
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.4e-87 325.5 235 66.0
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.9e-86 321.6 236 70.8
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 2.4e-85 319.3 202 78.2
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 4.1e-85 318.5 234 66.2
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.3e-82 308.9 189 81.0
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.1e-80 303.9 240 63.3
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 5.2e-80 301.6 218 66.1
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 1.2e-79 300.4 233 65.7
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.7e-78 296.6 182 76.9
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 1.1e-77 293.9 193 74.1
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.4e-77 292.7 233 63.1
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.3e-75 286.2 239 60.7
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.9e-75 285.4 203 68.5
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 4.3e-74 282.0 176 75.0
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.3e-74 281.2 233 63.9
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-73 280.4 174 79.3
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 6.9e-72 274.6 234 56.0
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 1.7e-67 260.0 235 54.0
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 1.1e-66 257.3 231 58.9
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 2.8e-65 252.7 235 54.9
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 3.6e-65 252.3 233 59.7
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.9e-62 242.7 144 81.2
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 4.9e-62 241.9 234 50.9
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-62 241.5 234 50.4
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.9e-61 240.0 144 78.5
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 1.7e-46 190.3 120 77.5
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 1.4e-45 187.2 125 72.8
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 7.1e-45 184.9 118 76.3
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.3e-43 180.6 131 66.4
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 1.1e-37 161.0 235 36.6
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 4.3e-34 149.1 224 38.4
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.1e-16 91.3 58 70.7
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 1.1e-16 91.3 240 25.0
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.6e-12 77.4 51 72.5
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.6e-12 77.4 51 74.5
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 8.8e-11 71.6 49 71.4
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.3e-10 69.7 53 69.8
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.1e-08 62.8 44 68.2
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 5.3e-08 62.4 37 81.1
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 1.2e-07 61.2 49 59.2
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.2e-06 57.0 70 45.7


User provided reference genes

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