Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 2537.7 1338 100.0
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1691.8 1369 67.9
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1684.5 1360 68.5
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1676.8 1370 67.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1676.0 1363 67.9
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1674.1 1360 68.0
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1673.3 1377 67.9
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1659.4 1370 67.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1652.5 1365 66.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1650.2 1366 66.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1649.8 1363 67.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1648.3 1357 67.2
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1640.2 1370 65.8
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1620.5 1361 66.5
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1599.7 1369 64.9
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1596.3 1390 63.9
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1590.9 1363 64.6
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1588.2 1373 65.5
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1585.9 1356 65.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1585.1 1371 64.0
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1579.3 1374 64.4
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1578.5 1376 63.7
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1578.1 1334 65.6
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1572.8 1393 63.3
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1567.4 1356 64.3
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1552.3 1361 63.6
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1532.7 1369 62.7
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1532.7 1365 61.6
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1526.9 1369 62.2
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1526.1 1359 61.4
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1524.6 1355 62.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1521.9 1339 64.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1517.3 1362 61.8
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1509.2 1364 61.3
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1508.0 1364 62.1
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1499.6 1329 62.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1498.0 1368 61.5
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1498.0 1370 60.7
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1497.3 1366 60.1
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1483.8 1362 61.2
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1483.4 1321 62.6
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1483.0 1317 62.5
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1482.2 1316 62.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1479.2 1328 62.3
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1479.2 1322 62.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1477.6 1324 62.2
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1477.2 1387 60.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1477.2 1309 62.8
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1473.4 1329 61.7
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1473.4 1366 58.9
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1470.3 1327 62.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1469.9 1372 59.9
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1468.4 1328 61.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1467.6 1399 58.9
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1467.2 1320 62.2
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1462.6 1320 62.3
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1456.8 1351 61.3
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1454.1 1323 61.5
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1452.6 1375 59.3
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1451.0 1377 59.8
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1447.6 1377 59.7
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1440.6 1323 60.5
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1440.2 1372 58.9
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1439.5 1328 61.1
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1437.6 1332 60.6
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1434.5 1378 59.7
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1431.4 1191 65.4
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1427.9 1331 60.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1418.3 1367 58.4
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1412.5 1376 58.2
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1407.5 1384 58.9
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1405.2 1296 61.6
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1402.1 1357 59.0
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1399.4 1365 57.5
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1398.6 1366 57.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1396.3 1287 59.8
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1375.9 1363 57.9
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1368.6 1366 57.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1364.0 1254 59.8
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1362.8 1218 62.0
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1362.4 1305 58.7
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1361.3 1354 57.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1311 59.3
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1358.2 1405 55.5
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1350.1 1225 61.5
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1081 67.5
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1317.4 1367 55.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1315.1 1294 57.7
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1282.7 1072 64.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1281.5 1103 63.3
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1273.1 1114 62.7
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1269.2 1340 55.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1251.1 1414 53.7
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1245.7 1368 54.6
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1162.5 1376 48.9
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1162.1 1367 51.0
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1152.9 1050 60.4
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1116.3 995 62.0
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1077.0 1312 50.1
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 8.2e-311 1070.8 1321 49.7
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.8e-308 1062.0 1213 51.8
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.9e-305 1052.0 1354 49.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 7.4e-304 1047.7 957 58.6
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 7.2e-267 924.9 965 55.1
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-260 903.7 773 63.4
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.2e-258 897.5 1032 50.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.7e-250 869.0 689 65.3
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 4.0e-249 865.9 774 61.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.9e-243 847.0 839 58.5
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.5e-243 844.7 1160 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.3e-231 807.7 1450 39.7
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.9e-231 805.8 1063 49.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.1e-221 773.9 1128 44.3
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.5e-211 740.3 846 52.1
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.4e-206 724.5 1483 35.5
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.3e-186 656.0 500 71.8
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 1.1e-179 635.2 623 57.1
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-167 594.7 454 72.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.1e-153 548.9 1250 33.2
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 7.0e-145 519.6 1517 29.3
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 9.5e-142 509.2 405 69.9
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.9e-137 495.0 409 68.9
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 6.6e-111 406.8 341 68.9
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.2e-105 387.9 376 58.0
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.9e-95 354.4 329 59.3
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.6e-86 323.2 371 53.4
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.9e-81 308.9 274 68.2
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.5e-81 308.5 447 44.1
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 2.9e-74 285.0 1422 25.0
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 3.4e-67 261.5 915 27.8
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.2e-59 236.5 596 35.7
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.5e-49 203.0 223 54.3
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.6e-43 183.0 154 61.7
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 3.7e-37 161.8 106 77.4
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-34 152.5 114 65.8
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.9e-31 140.6 231 39.8
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 3.4e-30 138.7 82 82.9
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.9e-29 135.6 171 51.5
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.6e-27 129.8 87 71.3
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.0e-27 129.4 114 60.5
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.7e-21 109.8 115 52.2
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.2e-13 82.8 106 56.6
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-13 82.4 81 55.6
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-13 82.4 81 55.6
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.1e-11 76.3 94 45.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 3.9e-10 72.0 59 64.4
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 1.6e-08 66.6 89 42.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.1e-07 63.9 150 28.0
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 2.0e-06 59.7 136 26.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 2.0e-06 59.7 136 26.5
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 2.6e-06 59.3 129 26.4
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 2.6e-06 59.3 144 27.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 2.6e-06 59.3 144 29.2
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 4.4e-06 58.5 134 25.4
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 4.4e-06 58.5 134 26.9
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 5.8e-06 58.2 135 26.7
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 5.8e-06 58.2 66 56.1
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 5.8e-06 58.2 136 25.7
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 9.9e-06 57.4 144 29.2
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 9.9e-06 57.4 138 26.8
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 9.9e-06 57.4 144 27.8
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 9.9e-06 57.4 53 54.7
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 9.9e-06 57.4 134 25.4


User provided reference genes

Program Settings