Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1687.2 824 100.0
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1255.0 833 75.2
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1234.6 871 72.2
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 0.0e+00 1229.2 829 73.6
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1221.1 839 72.6
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1214.1 833 73.0
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1213.4 832 73.9
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1210.3 832 72.7
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1209.5 834 72.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1209.1 832 72.6
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1207.6 833 72.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1201.8 831 70.6
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1199.1 834 70.9
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1196.4 832 71.2
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1194.9 829 71.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1194.9 832 71.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1193.7 827 70.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1191.4 834 71.9
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1191.0 827 70.7
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1189.9 833 71.8
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1180.2 826 69.5
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1179.9 828 70.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1179.9 830 69.9
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1175.6 826 70.3
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1172.9 848 70.0
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1172.5 826 70.2
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1172.1 826 70.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 0.0e+00 1167.5 837 69.2
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1167.1 826 69.7
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1166.0 826 69.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1166.0 827 70.1
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 0.0e+00 1165.2 834 69.5
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1164.1 824 69.9
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1149.8 832 68.9
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 0.0e+00 1139.4 829 68.3
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 0.0e+00 1135.2 830 67.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1129.4 827 67.7
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1129.4 826 67.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1124.0 836 66.6
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1121.3 826 66.9
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 0.0e+00 1120.5 837 68.0
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1119.0 826 67.1
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1118.6 834 67.4
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 0.0e+00 1117.8 831 67.0
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1114.8 825 66.2
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 0.0e+00 1114.0 837 67.5
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1113.2 832 67.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 0.0e+00 1108.6 840 66.9
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1108.6 837 67.1
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 0.0e+00 1107.8 837 66.8
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 0.0e+00 1107.0 838 66.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 0.0e+00 1107.0 837 67.1
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1107.0 831 66.2
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 0.0e+00 1105.1 838 66.5
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 0.0e+00 1104.0 833 65.8
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1098.6 832 66.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1094.0 839 66.2
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 0.0e+00 1091.3 828 65.7
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1089.3 825 65.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1089.3 833 65.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1085.5 827 66.1
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1083.6 838 66.5
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 0.0e+00 1082.8 843 66.7
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1079.7 825 66.1
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1078.5 830 65.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 0.0e+00 1078.2 832 64.3
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 5.6e-312 1074.7 843 66.3
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.6e-312 1073.5 843 66.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.1e-311 1073.2 835 64.2
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.7e-311 1072.4 843 65.8
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.3e-311 1072.0 833 65.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.1e-311 1070.8 824 65.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 6.8e-311 1070.5 828 64.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-310 1069.7 871 62.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.5e-310 1069.3 832 63.9
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.5e-310 1068.5 837 65.1
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.8e-309 1065.1 839 65.1
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 3.6e-309 1064.7 824 64.4
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.7e-309 1064.3 824 64.8
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 6.2e-309 1063.9 827 64.8
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 6.2e-309 1063.9 843 65.4
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.1e-308 1063.1 835 64.2
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.4e-308 1062.8 826 65.7
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.4e-308 1062.8 824 64.8
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.8e-308 1062.4 849 62.9
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.8e-308 1062.4 824 64.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 6.8e-308 1060.4 826 65.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 6.8e-308 1060.4 885 61.9
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 8.9e-308 1060.1 820 66.3
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.2e-307 1059.7 867 63.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.2e-307 1059.7 830 64.1
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.5e-307 1059.3 721 71.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.0e-307 1058.9 827 63.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 3.4e-307 1058.1 826 64.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.8e-307 1057.4 776 68.9
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-306 1056.2 707 74.5
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 7.0e-305 1050.4 830 62.2
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 7.0e-305 1050.4 827 64.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-304 1049.7 842 64.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.0e-304 1047.3 818 63.7
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.0e-303 1046.6 818 63.2
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.3e-303 1046.2 810 65.7
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 9.5e-302 1040.0 824 62.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.2e-301 1037.3 820 63.5
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.8e-300 1035.8 834 62.7
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.0e-300 1034.6 834 62.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.2e-300 1034.2 813 63.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-299 1032.7 815 63.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.9e-299 1030.0 829 63.9
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 1.6e-296 1022.7 836 61.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.0e-295 1020.0 820 63.3
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.3e-295 1019.6 824 62.1
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.5e-294 1015.4 827 64.1
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 6.2e-293 1010.7 829 61.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.8e-292 1007.3 833 62.5
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 3.4e-291 1005.0 840 61.1
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 7.6e-291 1003.8 793 63.8
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 4.9e-290 1001.1 779 65.5
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.1e-287 991.1 849 61.4
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.2e-285 986.5 849 61.0
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.6e-285 986.1 837 61.3
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.6e-285 984.9 742 64.6
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.4e-281 973.0 830 59.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 4.8e-277 958.0 836 58.5
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 6.4e-274 947.6 735 64.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 7.1e-273 944.1 834 60.2
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-272 943.3 872 57.8
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.7e-269 931.8 778 59.8
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.4e-265 919.8 640 72.2
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 6.2e-261 904.4 828 56.3
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.2e-261 904.0 827 55.5
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 3.1e-260 902.1 833 55.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 6.9e-260 901.0 733 61.4
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 3.3e-254 882.1 851 55.7
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 9.7e-254 880.6 834 56.0
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 6.9e-252 874.4 844 54.6
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 9.3e-249 864.0 839 53.5
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 5.1e-247 858.2 837 54.4
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.3e-245 853.6 846 55.1
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 3.4e-243 845.5 826 55.0
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.0e-238 829.7 833 52.9
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.2e-234 816.2 702 58.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 2.8e-200 703.0 603 62.0
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.0e-183 646.0 722 50.7
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.9e-180 637.1 901 40.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 3.3e-177 626.3 429 73.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.3e-167 592.4 918 38.2
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 4.2e-164 582.8 859 38.8
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.9e-154 549.7 926 36.9
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 3.1e-143 513.5 915 36.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.8e-142 509.2 411 62.8
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 5.1e-138 496.1 460 57.6
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.2e-125 454.1 639 41.3
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 7.9e-123 445.7 319 70.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.4e-119 434.1 298 73.2
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.2e-110 405.2 495 44.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.1e-95 355.5 256 68.4
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 9.1e-95 352.4 271 66.1
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 8.3e-88 329.3 316 51.6
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-79 302.0 698 33.0
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 3.4e-73 280.8 160 83.1
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 8.3e-72 276.2 225 61.3
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 2.1e-67 261.5 265 52.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.9e-64 250.4 268 53.7
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.2e-59 235.7 942 24.8
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.9e-48 197.2 119 79.8
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.1e-47 196.1 915 23.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 5.4e-47 193.7 199 53.8
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 7.1e-47 193.4 206 51.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.1e-44 186.0 202 50.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.1e-43 179.9 192 48.4
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-39 169.1 102 78.4
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 4.2e-39 167.5 471 29.7
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 9.6e-36 156.4 99 75.8
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.6e-33 146.7 104 66.3
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.6e-30 139.0 665 23.3
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.4e-26 125.2 110 55.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.3e-26 124.0 110 54.5
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.0e-26 123.2 110 54.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.5e-24 117.1 110 52.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.9e-23 115.5 107 57.0
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.5e-20 105.1 95 61.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-17 95.1 108 45.4
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.1e-13 80.9 110 43.6
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 3.1e-10 71.6 106 39.6


User provided reference genes

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