Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 8.5e-103 377.1 201 100.0
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.6e-80 302.4 183 86.9
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.0e-79 300.4 183 86.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 6.5e-79 297.7 183 83.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.1e-78 297.0 183 84.7
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.1e-78 297.0 183 84.7
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.5e-78 296.6 183 84.2
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.5e-78 295.8 183 85.2
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.2e-78 295.0 183 84.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.5e-78 294.7 183 83.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 7.2e-78 294.3 181 84.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.6e-77 293.1 183 83.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.1e-77 292.7 183 83.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.7e-77 292.4 183 82.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 3.6e-77 292.0 183 82.0
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.6e-77 292.0 182 83.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.1e-77 291.2 181 83.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.8e-76 289.7 183 81.4
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 6.7e-76 287.7 183 80.9
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 8.8e-76 287.3 183 81.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-75 287.0 183 80.9
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.2e-75 287.0 183 83.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.0e-75 286.2 183 81.4
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.6e-75 285.8 182 81.9
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.4e-75 285.0 182 79.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.7e-75 284.6 183 78.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.7e-75 283.9 178 83.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.3e-74 283.5 183 78.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.2e-74 282.7 181 80.7
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.2e-74 282.7 182 80.2
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.2e-74 282.7 183 77.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.2e-74 282.7 183 78.7
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.8e-74 282.3 183 79.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.8e-74 281.6 183 79.2
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.8e-74 281.6 183 78.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.8e-74 281.6 183 78.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.3e-74 281.2 182 81.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 6.3e-74 281.2 183 79.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 8.2e-74 280.8 182 80.2
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.2e-74 280.8 183 79.2
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.2e-74 280.8 183 78.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 8.2e-74 280.8 183 76.5
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.1e-73 280.4 183 80.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.1e-73 280.4 184 79.9
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.8e-73 279.6 182 80.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.4e-73 279.3 182 80.2
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.4e-73 279.3 182 79.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.4e-73 279.3 181 79.6
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.1e-73 278.9 182 79.1
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 4.1e-73 278.5 183 78.1
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 5.3e-73 278.1 185 77.3
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 5.3e-73 278.1 183 78.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.3e-73 278.1 183 77.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 7.0e-73 277.7 183 78.7
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 7.0e-73 277.7 183 78.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 7.0e-73 277.7 183 79.8
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 9.1e-73 277.3 183 79.2
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 9.1e-73 277.3 183 79.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.2e-72 276.9 183 78.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.0e-72 276.2 183 79.8
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.0e-72 276.2 178 77.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.7e-72 275.8 184 76.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.5e-72 275.4 184 76.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.5e-72 275.4 182 78.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.5e-72 275.0 183 76.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.9e-72 274.6 183 78.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 7.7e-72 274.2 183 77.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.0e-71 273.9 183 77.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-71 273.5 183 77.0
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.2e-71 272.7 183 78.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.9e-71 272.3 183 78.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.8e-71 271.9 166 86.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.8e-71 271.9 183 76.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 5.0e-71 271.6 184 77.2
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.5e-71 270.8 184 77.2
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.5e-71 270.8 183 76.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-70 270.4 184 77.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-70 270.0 183 75.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-70 270.0 183 75.4
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.5e-70 270.0 183 77.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.5e-70 270.0 182 75.8
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.5e-70 270.0 180 76.7
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.9e-70 269.6 183 77.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-70 269.2 183 74.9
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.2e-70 268.9 183 76.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.2e-70 268.5 184 76.6
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.5e-70 268.1 186 78.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 7.2e-70 267.7 182 78.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.2e-70 267.7 183 76.5
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.2e-70 267.7 183 75.4
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-69 266.5 184 76.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.6e-69 265.4 184 76.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 6.1e-69 264.6 183 76.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.0e-68 263.8 183 74.3
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.3e-68 262.7 187 75.4
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.0e-68 262.3 186 74.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.2e-68 261.5 182 73.6
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.2e-68 261.5 183 74.3
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 8.8e-68 260.8 169 81.1
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 8.8e-68 260.8 180 73.9
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.2e-67 260.4 184 72.8
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.2e-67 260.4 180 73.9
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-67 260.0 183 74.3
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.6e-67 259.2 183 73.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.6e-67 259.2 183 73.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.6e-67 259.2 182 74.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.4e-67 258.8 183 73.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.4e-67 258.8 183 73.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-66 256.9 175 74.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.7e-66 255.4 180 72.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.0e-64 249.6 157 81.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.7e-64 247.7 180 71.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.7e-63 246.5 182 69.2
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.3e-63 246.1 182 68.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.3e-63 246.1 183 69.4
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 6.6e-63 244.6 163 74.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.6e-63 244.2 169 74.6
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 8.6e-63 244.2 166 74.1
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.9e-62 243.0 151 85.4
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.2e-62 241.9 182 67.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 9.5e-62 240.7 183 67.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.1e-61 239.6 169 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.0e-55 220.7 169 68.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.8e-55 218.8 180 62.2
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.3e-54 215.7 169 65.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-49 200.7 169 61.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 7.8e-48 194.5 133 75.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 6.6e-47 191.4 196 56.6
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.2e-43 180.6 169 60.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-43 180.3 110 78.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.6e-43 179.5 183 58.5
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.5e-35 153.7 105 69.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-33 147.5 109 73.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 9.5e-30 134.4 153 49.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.0e-28 129.0 150 49.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-26 123.2 183 45.4
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-25 119.0 86 66.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.6e-19 99.8 161 37.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.4e-17 92.0 56 82.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.3e-15 87.4 82 57.3


User provided reference genes

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