Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.5e-59 231.9 114 100.0
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.8e-49 199.1 105 93.3
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.3e-49 198.7 102 95.1
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-49 198.7 102 95.1
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.1e-49 198.4 102 94.1
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-49 198.4 102 94.1
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 5.2e-49 197.6 102 95.1
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.5e-48 196.1 102 94.1
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.0e-48 195.7 102 93.1
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.4e-48 194.9 102 93.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 4.4e-48 194.5 102 93.1
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.8e-48 194.1 102 92.2
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.8e-48 194.1 102 92.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.5e-48 193.7 102 92.2
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 7.5e-48 193.7 102 91.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 7.5e-48 193.7 102 93.1
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.3e-47 193.0 102 91.2
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.3e-47 193.0 101 92.1
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.3e-47 193.0 102 91.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.2e-47 192.2 102 91.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 2.2e-47 192.2 102 91.2
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.9e-47 191.8 102 90.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 2.9e-47 191.8 102 90.2
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 3.7e-47 191.4 101 92.1
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.7e-47 191.4 102 90.2
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.9e-47 191.0 101 93.1
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.9e-47 191.0 101 93.1
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 6.4e-47 190.7 102 89.2
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 6.4e-47 190.7 102 90.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.4e-47 190.7 106 86.8
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.4e-47 190.7 100 92.0
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 8.3e-47 190.3 102 90.2
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.1e-46 189.9 100 92.0
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.1e-46 189.9 98 93.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.1e-46 189.9 104 87.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.1e-46 189.9 102 90.2
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.1e-46 189.9 102 90.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.4e-46 189.5 102 88.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.4e-46 189.5 101 90.1
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.4e-46 189.5 102 89.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.4e-46 189.5 102 89.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.4e-46 189.5 102 89.2
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.4e-46 189.5 101 90.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.9e-46 189.1 100 92.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.9e-46 189.1 98 93.9
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.4e-46 188.7 98 93.9
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.4e-46 188.7 102 88.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.4e-46 188.7 108 85.2
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 3.2e-46 188.3 100 91.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.2e-46 188.3 102 89.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.2e-46 188.3 102 89.2
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.2e-46 188.3 102 89.2
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.1e-46 188.0 98 92.9
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.1e-46 188.0 102 91.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 4.1e-46 188.0 100 89.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.1e-46 188.0 100 90.0
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.1e-46 188.0 102 88.2
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 5.4e-46 187.6 102 89.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 7.0e-46 187.2 98 92.9
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 7.0e-46 187.2 102 86.3
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 9.2e-46 186.8 98 92.9
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 9.2e-46 186.8 102 89.2
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 9.2e-46 186.8 102 89.2
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.2e-45 186.4 102 88.2
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.2e-45 186.4 102 89.2
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.6e-45 186.0 102 86.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.0e-45 185.7 102 88.2
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.0e-45 185.7 102 87.3
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.7e-45 185.3 102 87.3
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 2.7e-45 185.3 102 88.2
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.7e-45 185.3 102 87.3
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.7e-45 185.3 102 87.3
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.5e-45 184.9 102 86.3
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.5e-45 184.9 100 91.0
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.5e-45 184.9 109 84.4
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.6e-45 184.5 102 85.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.6e-45 184.5 100 89.0
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 4.6e-45 184.5 102 86.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 4.6e-45 184.5 102 86.3
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 6.0e-45 184.1 102 87.3
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.0e-45 184.1 102 87.3
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.0e-45 184.1 102 87.3
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 6.0e-45 184.1 99 89.9
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 7.8e-45 183.7 103 87.4
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.8e-45 183.7 102 86.3
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.8e-45 183.7 102 86.3
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.0e-44 183.3 102 85.3
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.0e-44 183.3 102 85.3
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.7e-44 182.6 102 86.3
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-44 182.2 102 86.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.0e-44 181.8 102 86.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 3.0e-44 181.8 102 85.3
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.9e-44 181.4 102 85.3
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 6.6e-44 180.6 102 85.3
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 6.6e-44 180.6 102 85.3
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 6.6e-44 180.6 102 84.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.1e-43 179.9 100 86.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.1e-43 179.9 105 80.0
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.5e-43 178.7 102 84.3
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.5e-43 178.7 102 86.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 3.3e-43 178.3 102 82.4
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 4.3e-43 177.9 101 81.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 7.3e-43 177.2 114 79.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.5e-43 176.8 102 83.3
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.5e-43 176.8 102 83.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.5e-43 176.8 102 82.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.8e-42 175.3 102 83.3
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.8e-42 175.3 100 83.0
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.2e-42 174.1 102 82.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 8.1e-42 173.7 102 81.4
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.3e-41 172.2 103 79.6
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.3e-41 172.2 103 79.6
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.3e-41 172.2 99 82.8
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.1e-41 171.8 103 78.6
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.0e-41 171.4 102 80.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 5.2e-41 171.0 102 77.5
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 5.8e-40 167.5 102 73.5
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.7e-39 166.0 103 75.7
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.2e-39 165.6 101 75.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.2e-39 165.6 103 76.7
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.2e-39 165.6 105 72.4
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.9e-39 165.2 102 72.5
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.4e-39 164.1 89 89.9
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.1e-37 159.1 87 86.2
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 3.5e-37 158.3 98 73.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.1e-36 154.5 104 77.9
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.3e-35 151.4 104 72.1
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 6.2e-34 147.5 77 92.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.2e-34 147.5 104 69.2
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.4e-33 146.4 90 74.4
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 5.8e-32 141.0 75 89.3
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 7.6e-32 140.6 75 89.3
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.1e-30 136.7 78 85.9
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.9e-30 136.0 100 65.0
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 7.1e-30 134.0 77 83.1
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 3.9e-28 128.3 102 65.7
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-26 121.7 101 59.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.1e-25 120.2 74 77.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 6.9e-25 117.5 105 54.3
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 5.1e-20 101.3 68 64.7
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.6e-19 97.8 52 92.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.1e-18 95.9 102 53.9
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 6.2e-18 94.4 50 86.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 6.2e-18 94.4 50 86.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.0e-12 77.0 51 68.6
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.4e-08 62.0 51 60.8


User provided reference genes

Program Settings