Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1841.6 945 100.0
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1450.6 1041 74.3
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1446.4 1048 74.0
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1446.4 1055 73.4
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1442.6 1048 73.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1441.8 1055 73.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1440.2 1049 73.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1438.3 1049 73.5
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1436.4 1043 73.3
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1434.9 1049 73.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1432.9 1022 74.6
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1432.5 1050 73.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1431.8 1044 73.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1431.8 1042 73.6
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1424.1 1052 72.9
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1042 72.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1416.4 1082 70.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1416.0 1052 72.9
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1415.6 1048 72.7
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1414.8 1021 73.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1405.2 1049 72.4
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1404.4 1049 72.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1403.3 1048 72.9
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1402.5 1040 72.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1402.5 1040 72.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1401.3 1050 72.9
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1400.6 1040 71.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1400.6 1048 71.7
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1400.2 1040 71.9
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1399.8 1041 71.8
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1399.4 1022 73.3
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1048 71.7
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1018 73.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1395.6 1051 71.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1395.6 1049 70.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1395.2 1049 71.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1393.6 1048 71.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1390.9 1049 71.5
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1389.8 1061 71.2
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1387.9 1062 70.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1384.0 1063 70.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1382.5 1043 71.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1379.8 1038 71.0
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1045 70.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1034 72.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1379.0 1055 70.7
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1372.8 1048 70.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1372.8 1050 69.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1370.9 1051 69.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1368.6 1045 70.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1368.2 1053 70.5
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1367.1 1054 70.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1365.9 1046 69.8
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1364.4 1063 70.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1364.0 1043 69.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1364.0 1048 69.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1363.6 1043 69.7
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1363.6 1071 69.3
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1363.6 1047 70.3
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1362.4 1043 70.3
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1362.1 1050 70.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1359.4 1043 69.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1358.2 1048 70.4
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1357.0 1049 69.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1354.7 1046 69.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1354.3 1044 69.3
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1352.8 1044 70.3
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1350.5 1043 70.2
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1349.0 1027 70.4
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1348.6 1044 69.9
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1347.0 1049 69.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1347.0 1049 69.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1346.6 1049 68.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1346.6 1049 69.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1342.4 1050 68.7
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1341.6 1051 69.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1339.7 1046 69.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1338.9 1053 68.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1336.6 1046 69.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1335.1 1052 69.9
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1333.9 1052 69.8
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1332.8 1042 69.2
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1331.6 1048 68.2
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1329.7 1048 68.1
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1326.6 1039 68.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1325.8 1039 68.6
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1322.4 1052 68.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1320.8 1042 68.8
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1320.4 1091 67.0
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1317.8 1095 67.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1317.0 1047 67.8
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1311.2 1023 68.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1310.4 1025 68.7
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1307.0 1040 67.9
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1278.5 1056 65.6
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1276.5 1145 62.2
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1270.8 1021 66.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1256.1 1059 64.9
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1256.1 1043 64.3
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1246.5 1015 65.4
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1245.7 1045 63.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1216.1 1024 64.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1177.2 1049 62.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1148.7 934 66.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1137.5 933 65.3
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1132.1 1048 61.3
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1120.5 1031 60.9
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1119.8 1014 62.1
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1103.2 1024 60.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1101.3 961 61.8
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 2.2e-310 1068.9 1023 57.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-298 1028.1 919 61.8
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 1.4e-296 1023.1 816 67.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 4.1e-264 915.2 1030 49.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 4.6e-260 901.7 1004 51.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-248 863.2 757 64.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.4e-248 862.8 1021 48.4
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.0e-246 857.4 1034 47.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.7e-242 840.9 930 54.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 3.7e-233 812.4 706 62.0
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 7.0e-232 808.1 706 62.5
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.2e-221 772.3 625 69.0
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-221 771.9 1038 46.3
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-213 747.3 1038 46.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 4.3e-213 745.7 1023 45.7
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 5.8e-202 708.8 619 63.0
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 4.7e-188 662.5 388 86.9
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.0e-186 657.1 387 87.1
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.6e-180 637.5 384 85.2
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.1e-179 633.3 549 63.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.6e-172 609.8 459 68.6
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.0e-154 550.8 1031 38.5
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.7e-153 547.7 356 77.5
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-151 540.8 416 65.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.0e-145 521.9 511 58.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 5.7e-141 506.1 424 62.0
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-140 504.6 922 38.9
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-134 485.0 376 69.1
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 8.2e-132 475.7 549 51.9
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 6.3e-124 449.5 357 63.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.8e-123 448.0 1040 31.4
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-122 444.5 365 66.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.5e-120 438.3 399 60.9
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 7.2e-112 409.5 282 74.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 4.7e-103 380.2 293 66.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-96 357.8 417 51.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-89 335.5 663 37.0
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.3e-86 324.7 285 62.8
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.2e-84 318.2 1058 28.4
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.4e-84 316.6 373 51.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-82 312.4 205 77.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-82 312.4 205 77.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 5.6e-80 303.5 519 37.6
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.5e-77 295.4 402 47.0
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-73 282.0 583 35.7
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.2e-70 270.4 185 76.2
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-65 254.2 235 61.7
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.3e-59 233.0 226 60.6
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.6e-50 204.1 122 82.8
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.6e-48 197.2 135 75.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.1e-47 195.3 123 79.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 9.0e-46 189.9 143 69.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 6.5e-44 183.7 187 49.7
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-35 154.1 176 51.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-34 152.9 127 64.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 3.5e-34 151.4 209 48.8
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.0e-33 149.8 84 88.1
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.8e-33 149.1 253 40.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-31 141.7 242 40.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.2e-29 136.3 208 42.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.2e-28 132.1 266 35.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.9e-28 131.7 91 74.7
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-27 129.4 265 39.2
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 6.7e-25 120.6 84 67.9
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.0e-13 82.4 55 78.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.3e-12 79.7 70 51.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.9e-11 75.9 115 40.0
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-10 72.4 81 51.9
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 3.0e-09 68.6 70 48.6


User provided reference genes

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