Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 4.5e-97 357.8 170 100.0
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 2.2e-80 302.4 168 86.3
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.5e-80 300.8 168 86.3
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.5e-80 300.8 168 86.3
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 3.6e-78 295.0 171 86.0
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.3e-77 292.4 169 84.0
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 2.3e-77 292.4 168 83.9
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 4.0e-77 291.6 169 84.6
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 5.2e-77 291.2 168 83.9
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 6.7e-77 290.8 168 84.5
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.8e-77 290.4 167 82.0
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.5e-76 289.7 168 85.7
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.3e-76 288.5 167 85.6
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 5.7e-76 287.7 168 85.1
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.7e-76 287.7 168 85.7
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 9.7e-76 287.0 159 84.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.3e-75 286.6 168 82.7
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 2.2e-75 285.8 167 82.0
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.8e-75 285.4 171 84.2
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 3.7e-75 285.0 168 85.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 3.7e-75 285.0 167 80.8
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 4.8e-75 284.6 166 83.1
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 4.8e-75 284.6 168 83.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 4.8e-75 284.6 168 81.5
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 6.3e-75 284.3 162 83.3
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 6.3e-75 284.3 171 80.1
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 8.2e-75 283.9 171 84.2
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 1.1e-74 283.5 170 81.2
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.1e-74 283.5 171 82.5
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.4e-74 282.3 181 78.5
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 2.4e-74 282.3 173 82.1
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 3.1e-74 282.0 168 82.7
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 5.3e-74 281.2 168 81.5
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 5.3e-74 281.2 167 82.6
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 5.3e-74 281.2 168 80.4
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.2e-73 280.0 163 81.6
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 1.2e-73 280.0 163 81.6
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.6e-73 279.6 162 84.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 2.7e-73 278.9 143 88.8
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 5.9e-73 277.7 161 84.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 5.9e-73 277.7 167 79.6
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 5.9e-73 277.7 153 86.3
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.9e-73 277.7 168 83.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 5.9e-73 277.7 169 80.5
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 5.9e-73 277.7 167 82.0
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.0e-72 276.9 151 84.8
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.0e-72 276.9 154 82.5
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.3e-72 276.6 158 84.8
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.3e-72 276.6 196 72.4
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.3e-72 276.6 142 90.8
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.3e-72 276.6 167 80.8
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.3e-72 276.6 161 82.0
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 1.3e-72 276.6 143 88.8
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.7e-72 276.2 140 90.7
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.7e-72 276.2 143 88.8
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.2e-72 275.8 168 79.2
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 5.0e-72 274.6 168 78.6
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 8.5e-72 273.9 161 82.0
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.1e-71 273.5 146 85.6
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.5e-71 273.1 166 78.3
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.5e-71 272.3 158 84.8
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.5e-71 272.3 168 78.0
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 5.5e-71 271.2 162 81.5
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 7.2e-71 270.8 162 81.5
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.2e-70 270.0 162 82.1
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.2e-70 270.0 172 76.7
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 1.6e-70 269.6 143 86.7
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.1e-70 269.2 171 77.8
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.6e-70 268.5 175 77.1
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 4.7e-70 268.1 135 91.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 4.7e-70 268.1 169 76.3
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 6.1e-70 267.7 171 77.2
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 8.0e-70 267.3 158 79.7
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.0e-69 266.9 167 76.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.4e-69 266.5 160 78.8
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.4e-69 266.5 147 85.0
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.8e-69 266.2 163 78.5
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 2.3e-69 265.8 172 75.6
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 2.3e-69 265.8 136 89.0
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 5.2e-69 264.6 139 87.1
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 8.8e-69 263.8 169 74.0
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.7e-67 259.6 172 73.8
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.7e-67 258.5 172 73.3
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.1e-66 256.9 161 75.8
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.8e-66 256.1 172 72.1
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.1e-66 255.4 156 76.9
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 9.1e-66 253.8 154 77.9
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 9.1e-66 253.8 159 74.2
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.5e-63 246.5 161 75.2
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.9e-63 246.1 151 76.2
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 1.9e-63 246.1 159 76.1
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 7.2e-63 244.2 155 74.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 1.6e-62 243.0 151 75.5
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 2.7e-62 242.3 161 77.6
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 6.1e-62 241.1 156 73.1
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.0e-61 240.4 155 73.5
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.8e-61 239.6 151 76.2
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.8e-61 239.6 151 74.8
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.8e-61 239.6 143 79.0
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 2.3e-61 239.2 158 74.7
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 3.0e-61 238.8 153 75.8
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.0e-61 238.8 154 74.0
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 6.8e-61 237.7 151 74.2
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 6.8e-61 237.7 151 74.2
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 6.6e-56 221.1 148 69.6
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 4.3e-55 218.4 141 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 9.5e-55 217.2 147 68.0
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 2.7e-49 199.1 138 65.2
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 3.1e-37 159.1 94 79.8
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 4.0e-37 158.7 160 54.4
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.3e-35 153.7 80 92.5
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 4.1e-34 148.7 82 85.4
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 9.2e-34 147.5 88 79.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.0e-32 144.1 81 82.7
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.0e-32 142.5 83 81.9
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 3.6e-30 135.6 83 75.9
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.4e-28 129.0 79 77.2
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 1.3e-27 127.1 69 85.5
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 4.9e-27 125.2 76 76.3
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 9.2e-26 120.9 78 74.4
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.1e-22 109.8 80 63.8
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 4.0e-21 105.5 145 46.9
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 7.6e-20 101.3 58 82.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 4.6e-17 92.0 57 75.4
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 1.3e-16 90.5 130 37.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 3.0e-16 89.4 58 70.7
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.1e-13 79.3 64 60.9
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.5e-12 77.0 137 37.2
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.0e-12 76.6 60 63.3
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 3.0e-08 62.8 49 63.3
Cfa023417 Carpinus fangiana HOM05D005962 ORTHO05D123568 1.6e-06 57.0 147 29.3


User provided reference genes

Program Settings