Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 2.1e-228 795.4 416 100.0
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 4.8e-84 315.8 192 81.8
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 1.8e-83 313.9 387 51.9
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 2.6e-82 310.1 213 74.6
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 4.5e-82 309.3 234 68.4
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 6.5e-81 305.4 199 74.4
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 8.5e-81 305.1 214 70.1
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.2e-80 302.8 275 59.6
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.6e-79 300.8 192 77.6
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 2.7e-79 300.1 175 82.3
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 2.7e-79 300.1 175 82.3
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 2.7e-79 300.1 233 67.8
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 3.6e-79 299.7 225 68.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 4.6e-79 299.3 176 81.2
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.8e-78 297.4 174 81.6
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.8e-78 297.4 174 81.6
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.1e-77 294.7 216 69.0
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 1.5e-77 294.3 178 78.7
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 4.3e-77 292.7 183 78.7
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 4.3e-77 292.7 186 76.9
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.7e-77 292.4 194 73.7
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 5.7e-77 292.4 184 77.7
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 5.7e-77 292.4 291 55.7
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 7.4e-77 292.0 197 75.6
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.3e-76 291.2 332 53.0
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.6e-76 290.8 370 48.9
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 3.7e-76 289.7 272 60.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.7e-76 289.7 186 78.0
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 8.2e-76 288.5 186 78.0
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 2.4e-75 287.0 195 71.8
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 9.1e-75 285.0 184 77.7
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 9.1e-75 285.0 226 65.9
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 2.0e-74 283.9 198 71.7
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 2.0e-74 283.9 225 65.3
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 2.0e-74 283.9 170 80.6
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 3.4e-74 283.1 213 66.7
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.0e-73 281.6 205 68.8
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.0e-73 281.6 205 68.8
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.0e-73 281.6 205 68.8
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.7e-73 280.8 198 71.7
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.7e-73 280.8 250 62.0
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-73 280.4 205 69.3
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.1e-72 278.1 217 66.8
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.4e-72 277.7 357 50.4
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.9e-72 277.3 194 70.1
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.5e-72 276.9 208 65.9
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 5.5e-72 275.8 319 51.7
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 9.4e-72 275.0 182 74.7
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 2.1e-71 273.9 211 67.8
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 2.7e-71 273.5 176 75.0
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.7e-71 273.5 216 64.8
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.6e-71 273.1 227 63.4
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 4.6e-71 272.7 160 82.5
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 7.9e-71 271.9 345 48.7
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.0e-70 271.6 197 70.6
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 1.4e-70 271.2 183 72.1
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 1.8e-70 270.8 329 48.6
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.8e-70 270.8 193 71.0
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 3.9e-70 269.6 176 75.6
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 6.7e-70 268.9 193 71.0
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 8.8e-70 268.5 218 65.1
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 1.1e-69 268.1 160 82.5
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.0e-69 267.3 404 45.8
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 4.4e-69 266.2 166 78.3
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 9.7e-69 265.0 222 63.1
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 2.2e-68 263.8 205 64.9
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 3.7e-68 263.1 195 69.2
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 3.7e-68 263.1 193 67.9
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 4.8e-68 262.7 176 71.0
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 4.8e-68 262.7 174 75.3
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 6.3e-68 262.3 156 79.5
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 6.3e-68 262.3 163 78.5
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 6.3e-68 262.3 205 63.9
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.1e-67 261.5 233 63.1
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.1e-67 261.5 162 78.4
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.4e-67 261.2 193 68.9
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.4e-67 261.2 195 68.2
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 4.1e-67 259.6 199 65.8
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.9e-67 258.8 169 74.0
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 6.9e-67 258.8 180 70.6
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 6.9e-67 258.8 209 64.1
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 2.0e-66 257.3 170 73.5
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.6e-66 256.9 166 74.1
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 4.5e-66 256.1 199 63.3
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 7.7e-66 255.4 186 66.7
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.0e-65 255.0 204 63.2
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 1.0e-65 255.0 181 69.1
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 2.2e-65 253.8 183 68.3
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.2e-65 253.8 166 72.9
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 6.5e-65 252.3 158 75.9
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.4e-64 251.1 196 64.3
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.5e-64 250.4 171 73.1
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 1.2e-63 248.1 158 74.7
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 1.2e-63 248.1 180 67.8
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-63 247.7 174 67.8
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.7e-63 246.9 201 60.2
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 3.6e-63 246.5 166 72.9
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 4.7e-63 246.1 233 57.1
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 7.9e-63 245.4 198 63.6
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.0e-61 240.7 194 63.9
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 5.7e-61 239.2 194 63.9
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 5.7e-61 239.2 194 63.9
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 5.7e-61 239.2 178 67.4
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.2e-60 237.3 176 67.0
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.8e-60 236.1 176 67.0
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 3.6e-55 219.9 209 53.1
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.8e-54 217.6 252 47.2
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.0e-54 216.9 135 77.8
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.3e-53 213.4 179 62.6
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 5.7e-53 212.6 196 56.1
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 5.7e-53 212.6 150 66.0
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 9.7e-53 211.8 166 65.7
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 3.7e-52 209.9 208 53.8
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 8.2e-52 208.8 150 64.7
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 1.1e-51 208.4 225 48.9
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 7.7e-50 202.2 180 56.1
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 2.9e-49 200.3 207 53.6
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 8.5e-49 198.7 145 71.0
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 2.7e-47 193.7 139 72.7
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 6.3e-44 182.6 121 75.2
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.1e-43 179.9 122 68.9
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.1e-43 178.7 166 53.0
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 3.0e-38 163.7 131 61.1
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.4e-35 154.8 93 75.3
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.3e-33 147.5 126 58.7
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.5e-32 144.8 131 57.3
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 9.5e-32 142.1 126 56.3
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 4.9e-28 129.8 113 61.9
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.4e-27 128.3 102 64.7
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 1.8e-27 127.9 186 40.3
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 7.5e-21 105.9 212 40.1
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 1.6e-18 98.2 59 74.6
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 2.8e-15 87.4 127 45.7
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 6.4e-12 76.3 98 44.9
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 7.1e-11 72.8 74 51.4
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 1.6e-10 71.6 75 49.3
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 2.1e-07 61.2 110 40.0


User provided reference genes

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