Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 0.0e+00 1088.6 543 100.0
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 3.1e-115 419.9 738 39.4
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 4.9e-113 412.5 736 38.6
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 4.2e-112 409.5 736 38.9
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.0e-110 403.3 738 38.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 8.7e-110 401.7 741 38.5
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 9.9e-106 388.3 737 37.3
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 1.2e-103 381.3 714 37.4
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.4e-98 363.2 556 42.3
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 8.4e-97 358.6 733 35.2
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.1e-95 354.0 702 36.5
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.5e-93 347.1 692 37.1
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 4.3e-93 346.3 718 35.9
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 7.4e-93 345.5 708 35.7
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 9.6e-93 345.1 697 35.2
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 2.4e-91 340.5 656 36.6
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 3.1e-91 340.1 653 36.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 5.3e-91 339.3 684 34.8
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 1.5e-90 337.8 656 36.4
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 3.4e-90 336.7 682 34.2
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 3.4e-90 336.7 693 34.9
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 7.6e-90 335.5 596 37.6
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 1.0e-89 335.1 691 34.2
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 1.0e-89 335.1 670 34.3
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.4e-88 331.3 665 34.9
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.9e-88 330.9 702 35.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 1.9e-88 330.9 740 36.1
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.9e-88 330.9 760 33.7
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.2e-88 329.7 714 34.6
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 7.1e-88 328.9 651 35.2
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 7.9e-87 325.5 631 36.0
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 7.9e-87 325.5 624 36.9
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 3.3e-85 320.1 702 32.9
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 9.6e-85 318.5 671 34.0
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 2.8e-84 317.0 685 34.0
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 4.8e-84 316.2 676 35.1
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 6.3e-84 315.8 627 36.0
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 8.2e-84 315.5 678 34.4
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-83 315.1 616 35.1
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.8e-83 314.3 672 34.8
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 6.9e-83 312.4 668 35.2
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.2e-82 311.6 619 34.6
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 2.6e-82 310.5 705 33.3
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.6e-82 310.5 691 34.0
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 3.4e-82 310.1 671 34.4
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 5.9e-82 309.3 674 34.0
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.3e-81 308.1 686 33.4
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 1.7e-81 307.8 695 32.5
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.9e-81 307.0 689 34.1
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 5.0e-81 306.2 697 33.1
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.9e-80 304.3 698 33.7
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 3.2e-80 303.5 700 34.0
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 9.3e-80 302.0 659 33.1
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.5e-79 300.1 625 34.2
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.0e-78 298.5 733 34.2
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 1.6e-76 291.2 425 41.9
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 1.6e-76 291.2 699 32.0
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 8.2e-76 288.9 699 31.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 8.2e-76 288.9 744 30.5
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.8e-75 287.7 697 32.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 3.1e-75 287.0 624 34.3
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 5.9e-74 282.7 664 31.9
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 7.7e-74 282.3 315 51.1
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 7.7e-74 282.3 721 33.3
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-73 281.6 718 31.6
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 5.5e-72 276.2 730 32.2
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 3.6e-71 273.5 416 41.6
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.6e-71 273.1 327 48.3
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 3.0e-70 270.4 371 43.4
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 8.8e-70 268.9 714 29.3
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 4.3e-69 266.5 645 34.6
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 7.7e-66 255.8 735 29.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.0e-65 255.4 369 41.7
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 3.8e-65 253.4 369 42.0
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 5.0e-65 253.1 609 30.4
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 1.2e-63 248.4 370 41.1
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 7.9e-63 245.7 616 31.8
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.8e-62 244.6 669 30.6
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 5.7e-61 239.6 658 29.5
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 9.1e-59 232.3 508 33.3
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 1.1e-56 225.3 324 41.0
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 4.4e-53 213.4 336 38.7
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 1.3e-52 211.8 337 38.0
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 8.5e-49 199.1 395 37.2
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.7e-47 194.1 280 41.8
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.6e-45 187.6 339 36.6
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 7.7e-42 176.0 86 100.0
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 4.4e-37 160.2 534 27.9
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 7.0e-35 152.9 93 71.0
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.6e-31 141.7 107 63.6
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 5.2e-30 136.7 122 54.1
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 7.3e-24 116.3 72 68.1
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.2e-23 115.5 138 42.8
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 2.0e-21 108.2 166 39.8
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 4.4e-21 107.1 77 67.5
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 7.5e-21 106.3 72 69.4
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.1e-19 102.4 93 54.8
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 3.2e-19 100.9 97 53.6
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.4e-14 85.5 82 51.2
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 7.5e-13 79.7 94 47.9


User provided reference genes

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