Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 0.0e+00 1180.6 597 100.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.8e-257 892.5 595 78.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 5.2e-257 891.0 595 78.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.0e-256 889.0 598 77.9
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.3e-255 884.0 599 77.6
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 6.3e-255 884.0 595 77.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.4e-254 882.1 595 77.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.4e-254 882.1 598 76.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.0e-254 880.6 597 77.1
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.1e-254 880.2 595 76.8
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.6e-253 879.4 597 77.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.7e-253 878.6 619 75.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.9e-251 872.5 595 76.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.5e-251 870.9 595 76.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.3e-249 865.5 595 75.3
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.0e-248 862.4 595 75.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.6e-248 862.1 595 75.8
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.6e-248 862.1 597 74.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.7e-247 859.4 595 75.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.3e-247 857.4 597 75.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.3e-247 857.4 595 75.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 5.4e-246 854.4 598 74.6
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 9.2e-246 853.6 597 75.5
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.2e-246 853.6 597 73.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-245 853.2 598 74.2
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.5e-245 851.7 595 74.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.5e-245 851.7 597 73.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-244 849.7 597 73.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.6e-244 847.4 597 73.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.6e-244 847.0 597 72.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.9e-243 845.9 597 74.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.9e-243 845.9 595 74.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.5e-243 845.5 595 74.6
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 3.3e-243 845.1 595 73.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.3e-243 844.7 597 74.9
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 5.6e-243 844.3 597 73.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.2e-242 843.2 615 74.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.6e-242 842.8 594 74.4
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.1e-242 842.4 597 72.9
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 3.6e-242 841.6 643 70.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 6.1e-242 840.9 595 73.3
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 6.1e-242 840.9 597 74.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.0e-241 838.6 595 74.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.6e-240 835.5 595 72.6
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.4e-240 834.7 595 73.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.4e-240 834.7 595 73.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.7e-240 834.3 600 73.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.5e-240 833.9 585 74.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.2e-239 832.4 597 72.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.9e-239 832.0 595 73.6
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.9e-239 832.0 598 74.4
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 6.4e-239 830.9 600 72.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 8.3e-239 830.5 596 72.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 8.3e-239 830.5 600 72.8
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-238 829.3 598 72.9
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.8e-238 829.3 595 72.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.4e-238 828.9 595 72.4
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.4e-238 828.9 595 72.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.2e-238 828.6 600 72.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.2e-238 828.6 595 73.1
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.2e-238 828.6 665 68.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.4e-238 827.8 600 71.5
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.2e-237 826.6 596 72.1
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.6e-237 826.2 600 72.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.6e-237 826.2 602 72.3
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 4.6e-237 824.7 600 72.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.3e-236 823.2 601 72.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-236 822.8 595 72.1
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.0e-236 822.0 596 71.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.0e-236 821.2 598 72.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 5.0e-236 821.2 595 73.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 6.6e-236 820.8 593 71.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.1e-235 820.1 594 71.2
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-235 820.1 595 71.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 3.3e-235 818.5 585 72.6
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.6e-235 817.8 600 71.5
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 9.5e-235 817.0 598 71.4
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-234 816.2 596 71.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.8e-234 815.5 595 71.8
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.8e-234 815.5 597 71.2
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.8e-234 815.5 595 71.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.7e-234 814.7 596 72.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 8.0e-234 813.9 596 70.8
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-234 813.9 596 70.8
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-234 813.9 596 70.8
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 8.0e-234 813.9 596 70.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 8.0e-234 813.9 595 71.4
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.8e-233 812.8 596 70.6
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 6.8e-233 810.8 581 72.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 5.8e-232 807.7 595 71.3
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.3e-231 806.6 593 71.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.7e-231 805.1 614 69.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.9e-231 804.7 592 72.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.0e-229 797.7 584 71.2
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.0e-229 797.7 582 72.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-228 796.6 593 71.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.6e-228 793.9 592 70.3
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 5.6e-227 791.2 591 70.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.7e-226 788.1 564 74.1
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.0e-220 770.4 558 71.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.9e-220 768.5 597 67.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 8.6e-220 767.3 594 66.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 8.6e-220 767.3 597 67.5
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.1e-214 747.7 597 67.0
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.3e-211 738.8 587 68.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.3e-211 738.8 587 67.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.6e-210 736.5 530 72.3
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.4e-208 728.4 630 62.9
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.9e-204 715.3 536 70.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.5e-203 712.6 649 58.9
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 6.9e-201 704.5 597 63.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 4.0e-193 678.7 597 60.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.4e-192 675.6 599 58.4
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.7e-191 673.3 399 84.2
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.6e-189 666.8 398 82.9
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.3e-188 663.7 598 61.2
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.9e-185 651.4 536 65.9
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-184 649.8 389 82.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.4e-177 627.1 545 62.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.3e-169 598.6 474 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.9e-161 571.6 602 50.7
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.5e-152 542.7 601 49.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.7e-149 532.3 599 47.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.2e-141 507.7 296 84.8
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 6.1e-141 505.4 472 58.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-131 473.8 400 64.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.2e-125 454.5 628 41.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.6e-123 446.8 452 55.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-121 441.4 247 87.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 6.6e-119 432.2 602 42.4
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.4e-114 415.6 350 64.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.2e-101 374.8 209 84.7
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.9e-99 365.2 523 45.3
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-93 348.2 315 63.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.6e-86 322.0 470 43.2
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.8e-84 317.8 350 53.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.9e-71 273.5 307 53.7
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.8e-66 256.9 650 30.8
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 4.3e-62 243.4 382 38.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.3e-61 239.6 142 82.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 6.9e-52 209.5 116 85.3
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 6.9e-52 209.5 116 85.3
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 9.1e-52 209.1 115 86.1
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.8e-44 184.9 105 85.7
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.0e-44 183.0 107 83.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.9e-34 151.0 96 76.0
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-33 148.7 97 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.3e-31 141.4 120 55.8
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.3e-31 141.4 97 70.1
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 3.7e-29 134.0 632 25.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.0e-26 123.6 72 81.9
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 4.0e-23 114.0 69 71.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.8e-23 112.8 66 81.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.2e-19 102.4 220 32.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 7.7e-19 99.8 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 4.2e-17 94.0 653 22.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 5.7e-14 83.6 49 79.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.7e-13 82.0 71 52.1
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.8e-13 81.3 48 79.2
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 6.1e-08 63.5 89 43.8


User provided reference genes

Program Settings