Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.0e-97 358.6 196 100.0
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 4.3e-75 285.0 201 80.6
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 9.5e-75 283.9 201 80.1
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 9.5e-75 283.9 201 80.1
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 8.0e-74 280.8 197 81.7
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.4e-73 280.0 201 79.1
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 6.8e-73 277.7 201 79.1
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.2e-72 276.9 201 78.6
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 3.4e-72 275.4 202 78.7
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 8.3e-71 270.8 197 79.7
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 8.3e-71 270.8 201 76.6
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.2e-70 268.9 202 77.7
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.1e-70 268.5 201 76.6
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.7e-69 265.8 196 77.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 7.8e-69 264.2 198 79.3
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.3e-68 263.5 202 75.7
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 3.9e-68 261.9 201 75.1
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 6.6e-68 261.2 202 74.8
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 8.6e-68 260.8 195 76.9
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-67 260.4 201 76.1
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 3.3e-67 258.8 205 74.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 9.5e-67 257.3 202 73.8
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.6e-66 256.5 202 73.8
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.4e-65 253.4 203 71.9
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.8e-65 253.1 194 73.2
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 6.8e-65 251.1 200 72.5
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.2e-64 250.4 200 75.0
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 2.0e-64 249.6 203 73.9
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.6e-64 249.2 203 72.4
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 7.5e-64 247.7 197 73.6
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 9.9e-64 247.3 202 71.8
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.3e-63 246.9 197 74.1
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.3e-63 246.9 195 72.8
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.2e-63 246.1 205 72.7
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.2e-63 246.1 199 72.4
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 6.4e-63 244.6 202 71.3
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.4e-62 243.4 204 72.5
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 3.2e-62 242.3 200 72.0
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 3.2e-62 242.3 198 70.7
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.2e-62 242.3 199 75.4
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 7.1e-62 241.1 198 71.7
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.2e-61 240.4 202 69.8
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 7.8e-61 237.7 207 71.0
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 7.8e-61 237.7 202 71.8
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.0e-60 237.3 202 72.3
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.7e-60 236.5 204 70.1
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 2.3e-60 236.1 203 70.4
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 8.6e-60 234.2 206 70.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.1e-59 233.8 205 69.8
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 1.1e-59 233.8 203 70.4
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.5e-59 232.6 204 67.2
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.5e-59 232.6 196 70.9
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.3e-59 231.9 199 68.3
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 7.3e-59 231.1 196 69.9
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.2e-58 230.3 201 70.1
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.2e-58 230.3 203 69.5
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.6e-58 229.9 204 70.6
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.6e-58 229.9 199 69.8
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.4e-57 226.9 203 69.0
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 3.1e-57 225.7 200 69.5
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.8e-57 224.6 201 68.2
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 8.9e-57 224.2 169 76.3
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 8.9e-57 224.2 204 66.7
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.2e-56 223.8 202 65.8
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-56 223.8 201 67.7
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.2e-56 223.8 204 68.6
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.5e-56 223.4 202 67.3
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-56 223.4 202 67.3
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.5e-56 223.4 207 70.5
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.0e-56 223.0 201 67.2
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.0e-56 223.0 201 67.2
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 2.6e-56 222.6 199 65.3
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 4.4e-56 221.9 201 68.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 5.8e-56 221.5 202 66.8
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.2e-55 219.5 206 65.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 2.9e-55 219.2 196 67.9
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.9e-55 219.2 206 66.0
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 3.8e-55 218.8 197 69.0
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 8.4e-55 217.6 206 64.6
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.9e-54 216.5 198 65.2
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 5.4e-54 214.9 197 67.5
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 7.1e-54 214.5 199 65.3
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 9.2e-54 214.2 199 64.8
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.6e-53 213.4 201 63.7
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 2.1e-53 213.0 201 65.7
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 3.5e-53 212.2 213 65.3
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 7.8e-53 211.1 204 66.7
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.3e-52 210.3 198 65.2
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 2.3e-52 209.5 197 63.5
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.5e-51 206.8 201 65.7
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.5e-51 206.8 202 65.3
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.5e-51 206.1 197 64.5
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.6e-51 204.9 206 63.6
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 9.6e-51 204.1 212 64.2
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.2e-50 203.8 208 61.5
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.6e-50 202.2 191 63.4
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 3.6e-50 202.2 200 61.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 4.7e-50 201.8 200 63.0
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.4e-49 199.5 199 62.3
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.3e-49 198.4 199 59.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.7e-47 193.4 198 59.6
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-47 193.4 198 60.1
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.9e-47 191.8 200 64.5
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 8.4e-47 191.0 208 57.7
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.9e-46 189.9 207 57.0
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.9e-46 189.9 207 57.0
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.2e-46 189.1 211 56.4
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.2e-46 189.1 208 56.7
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.2e-46 189.1 203 58.6
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 4.2e-46 188.7 208 56.7
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 4.2e-46 188.7 208 56.7
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 4.2e-46 188.7 208 56.7
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.1e-45 186.4 200 62.0
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 3.5e-45 185.7 192 57.8
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 6.0e-45 184.9 210 58.1
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 7.8e-45 184.5 210 55.2
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-44 183.3 209 56.5
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.7e-44 183.3 209 56.5
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 3.0e-44 182.6 198 57.1
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.0e-44 182.6 207 57.5
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 6.6e-44 181.4 206 53.9
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 6.6e-44 181.4 162 64.8
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.3e-43 179.1 206 58.3
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 3.3e-43 179.1 197 58.9
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.3e-42 177.2 204 55.9
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.6e-42 176.8 204 55.9
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.8e-41 173.3 206 54.4
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 3.1e-41 172.6 205 54.6
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 9.0e-41 171.0 172 62.2
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.2e-40 170.6 204 54.9
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.2e-40 170.6 196 53.6
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.9e-39 166.0 201 51.7
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 7.1e-38 161.4 181 52.5
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.1e-37 159.8 176 56.2
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 2.7e-37 159.5 175 52.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 9.6e-35 151.0 113 70.8
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 2.4e-33 146.4 205 48.3
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 5.3e-33 145.2 203 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.5e-32 143.7 177 49.2
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 1.5e-32 143.7 201 48.3
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.5e-32 143.7 136 54.4
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.0e-32 143.3 144 52.8
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.3e-31 140.6 181 45.9
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.1e-30 137.5 138 52.9
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.1e-29 133.3 118 70.3
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 9.0e-25 117.9 125 56.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.2e-24 117.5 141 47.5
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.9e-23 112.8 132 53.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.1e-22 108.2 185 45.4
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.7e-21 106.3 137 48.2
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-21 105.9 132 50.8
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 1.8e-20 103.6 154 55.2
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 5.1e-20 102.1 198 39.4
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 9.7e-19 97.8 77 67.5
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 8.2e-18 94.7 138 47.1
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.5e-16 90.5 113 50.4
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.9e-16 88.6 112 50.9
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 7.2e-14 81.6 86 65.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.0e-12 77.8 118 44.1
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 9.1e-09 64.7 139 34.5
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.1e-06 57.8 115 34.8


User provided reference genes

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