Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 3.8e-312 1074.7 562 100.0
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 7.7e-186 654.4 572 64.9
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.7e-180 636.7 573 63.7
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.4e-173 612.1 573 62.0
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 8.2e-172 607.8 570 62.1
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.1e-168 597.4 580 60.9
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 6.1e-167 591.7 538 63.2
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 6.1e-167 591.7 580 60.3
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 3.7e-164 582.4 572 59.3
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 1.4e-163 580.5 579 59.4
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.5e-160 570.5 586 59.4
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 1.8e-158 563.5 585 57.1
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 3.7e-156 555.8 572 58.7
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 7.2e-152 541.6 582 58.9
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.8e-151 539.7 585 56.6
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 8.0e-151 538.1 606 55.6
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.4e-149 532.7 571 58.1
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.1e-147 527.7 585 56.9
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 5.4e-147 525.4 578 56.1
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.6e-146 522.3 597 56.1
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 1.3e-145 520.8 570 55.8
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 3.9e-145 519.2 572 56.6
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 5.0e-145 518.8 586 55.6
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 8.6e-145 518.1 572 55.9
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.1e-144 517.7 551 56.6
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.9e-144 516.9 584 55.0
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 9.5e-144 514.6 586 56.0
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 9.5e-144 514.6 586 56.1
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 6.2e-143 511.9 611 54.3
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 8.9e-142 508.1 580 55.3
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.6e-141 506.5 577 55.8
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 2.6e-141 506.5 531 56.7
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 3.5e-138 496.1 599 53.3
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.3e-137 494.2 580 53.3
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 3.9e-137 492.7 600 52.5
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 9.5e-136 488.0 573 52.9
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 2.8e-135 486.5 578 54.0
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.8e-134 483.8 599 53.6
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.3e-134 483.4 599 53.3
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 1.4e-131 474.2 537 54.0
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 3.2e-131 473.0 582 51.7
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 2.7e-130 469.9 534 53.7
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 2.7e-130 469.9 541 53.4
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 7.8e-130 468.4 572 51.7
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 2.3e-129 466.8 573 52.5
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 3.9e-129 466.1 541 53.6
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 4.3e-128 462.6 520 53.1
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 7.3e-128 461.8 582 52.4
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 9.5e-128 461.5 538 53.3
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.2e-127 461.1 565 52.0
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 6.2e-127 458.8 541 52.5
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 6.4e-124 448.7 550 51.6
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 8.4e-124 448.4 427 61.6
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.4e-123 446.8 604 48.8
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 3.2e-123 446.4 596 49.2
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 2.7e-122 443.4 418 62.0
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 2.7e-122 443.4 680 45.9
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 3.9e-121 439.5 534 52.1
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 8.6e-121 438.3 563 50.1
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 1.1e-120 438.0 596 48.2
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.5e-120 437.6 576 49.1
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 5.6e-120 435.6 645 47.3
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.8e-117 425.6 433 59.4
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 3.2e-115 419.9 540 50.0
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 9.3e-115 418.3 413 59.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 1.6e-114 417.5 418 61.0
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 2.1e-114 417.2 580 48.3
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 2.1e-114 417.2 500 53.4
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 2.4e-110 403.7 421 59.9
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.2e-106 391.3 427 58.3
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 7.4e-104 382.1 438 57.3
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 2.4e-102 377.1 572 45.3
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 3.4e-101 373.2 455 51.6
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 3.8e-100 369.8 559 44.5
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 3.2e-99 366.7 418 53.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 4.2e-99 366.3 437 52.9
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 5.6e-96 355.9 424 55.0
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 3.7e-95 353.2 434 52.3
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.8e-94 350.9 600 43.8
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.0e-92 345.1 635 41.9
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.9e-92 343.6 582 41.9
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.9e-92 342.8 358 55.9
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 7.1e-91 339.0 453 49.7
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 3.5e-90 336.7 416 51.0
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.3e-89 334.7 360 55.3
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 3.8e-84 316.6 395 53.9
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 3.8e-84 316.6 569 42.0
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 4.6e-82 309.7 427 48.9
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.8e-81 307.8 394 49.7
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 3.9e-81 306.6 640 38.0
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 2.5e-80 303.9 663 36.0
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 1.5e-77 294.7 387 50.9
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 5.0e-76 289.7 230 70.4
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 7.9e-74 282.3 454 44.3
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 1.1e-64 251.9 383 48.3
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 7.4e-64 249.2 379 47.5
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 2.8e-63 247.3 349 49.6
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 9.1e-62 242.3 295 53.9
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.1e-59 235.3 555 35.1
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.6e-58 231.5 547 36.2
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.0e-45 188.0 269 46.5
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 2.0e-40 171.4 143 62.9
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 2.6e-40 171.0 143 65.7
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 4.1e-38 163.7 147 57.8
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.9e-36 157.5 147 59.9
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 1.5e-35 155.2 147 59.9
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 9.5e-35 152.5 145 57.2
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 2.4e-30 137.9 146 54.1
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 9.2e-30 136.0 144 53.5
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 3.5e-29 134.0 151 52.3
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 7.8e-29 132.9 136 55.1
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 5.2e-25 120.2 401 31.2
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 9.2e-14 82.8 168 36.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-11 73.2 82 48.8
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 6.8e-09 66.6 69 46.4
Actinidia32261 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.4e-08 64.3 49 71.4
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 1.3e-07 62.4 110 31.8
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 4.9e-07 60.5 56 64.3
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 4.9e-07 60.5 56 64.3
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 4.9e-07 60.5 127 29.9
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 4.9e-07 60.5 92 31.5
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 4.9e-07 60.5 110 32.7
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 4.9e-07 60.5 110 31.8
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 6.4e-07 60.1 114 29.8
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 8.4e-07 59.7 79 35.4
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 8.4e-07 59.7 110 30.9
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 1.1e-06 59.3 174 27.0
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 1.1e-06 59.3 176 27.8
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 1.9e-06 58.5 172 26.7
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.9e-06 58.5 85 35.3
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 1.9e-06 58.5 56 41.1
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 2.4e-06 58.2 173 26.6
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 3.2e-06 57.8 111 33.3
MD16G1250800 Malus domestica HOM05D002594 ORTHO05D003499 3.2e-06 57.8 61 37.7
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 3.2e-06 57.8 175 28.0
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 4.1e-06 57.4 114 41.2
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 5.4e-06 57.0 61 37.7
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 5.4e-06 57.0 110 33.6
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.4e-06 57.0 85 34.1
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.4e-06 57.0 85 34.1
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 5.4e-06 57.0 56 44.6
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 5.4e-06 57.0 56 42.9
BolC1t01000H Brassica oleracea HOM05D014849 ORTHO05D016773 7.1e-06 56.6 55 61.8
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 7.1e-06 56.6 61 39.3
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 7.1e-06 56.6 61 39.3
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 7.1e-06 56.6 61 39.3
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 7.1e-06 56.6 61 39.3
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 7.1e-06 56.6 110 32.7
HPP92_018925 Vanilla planifolia HOM05D002594 ORTHO05D003499 7.1e-06 56.6 70 37.1
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 7.1e-06 56.6 60 40.0
Aa31LG6G11580 Aethionema arabicum HOM05D002594 ORTHO05D003499 9.2e-06 56.2 76 34.2
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 9.2e-06 56.2 61 39.3


User provided reference genes

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