Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.139 Carica papaya HOM05D004103 ORTHO05D005242 8.5e-88 327.0 170 100.0
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 2.1e-38 162.9 120 65.8
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 8.3e-35 151.0 120 63.3
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 5.4e-34 148.3 127 59.1
Haze_09826 Corylus avellana HOM05D004103 ORTHO05D005242 1.2e-33 147.1 127 59.1
Duzib213G0942 Durio zibethinus HOM05D004103 ORTHO05D005242 7.8e-33 144.4 118 60.2
Duzib170G0622 Durio zibethinus HOM05D004103 ORTHO05D005242 1.3e-32 143.7 119 58.0
Thecc.07G013500 Theobroma cacao HOM05D004103 ORTHO05D005242 1.1e-31 140.6 117 57.3
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 1.9e-31 139.8 118 59.3
CiPaw.11G204100 Carya illinoinensis HOM05D004103 ORTHO05D005242 2.5e-31 139.4 125 58.4
Manes.03G141400 Manihot esculenta HOM05D004103 ORTHO05D005242 7.3e-31 137.9 119 58.8
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 9.5e-31 137.5 127 55.1
COL.COLO4_09834 Corchorus olitorius HOM05D004103 ORTHO05D005242 6.2e-30 134.8 119 56.3
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 8.1e-30 134.4 118 57.6
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 1.1e-29 134.0 118 56.8
Dinv40861 Davidia involucrata HOM05D004103 ORTHO05D005242 2.3e-29 132.9 126 57.9
Gohir.A13G132700 Gossypium hirsutum HOM05D004103 ORTHO05D005242 1.5e-28 130.2 117 55.6
Gorai.013G152600 Gossypium raimondii HOM05D004103 ORTHO05D005242 2.0e-28 129.8 117 55.6
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 2.6e-28 129.4 125 56.8
Ca_22143_v3 Cicer arietinum L. HOM05D004103 ORTHO05D005242 3.4e-28 129.0 122 52.5
Glyma.18G076300 Glycine max HOM05D004103 ORTHO05D005242 4.4e-28 128.6 125 52.0
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 1.3e-27 127.1 128 51.6
Phvul.006G057700 Phaseolus vulgaris HOM05D004103 ORTHO05D005242 2.2e-27 126.3 125 52.0
arahy.Tifrunner.gnm1.ann1.PC7QSD Arachis hypogaea HOM05D004103 ORTHO05D005242 2.9e-27 125.9 125 53.6
arahy.Tifrunner.gnm1.ann1.V7V5NB Arachis hypogaea HOM05D004103 ORTHO05D005242 2.9e-27 125.9 125 53.6
THA.LOC104811666 Tarenaya hassleriana HOM05D004103 ORTHO05D005242 6.4e-27 124.8 122 51.6
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 1.1e-26 124.0 122 50.8
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 1.4e-26 123.6 128 51.6
Psat5g167680 Pisum sativum HOM05D004103 ORTHO05D005242 3.2e-26 122.5 122 47.5
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 7.1e-26 121.3 126 49.2
AL77U10010 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 1.6e-25 120.2 124 49.2
AT5G55760 Arabidopsis thaliana HOM05D004103 ORTHO05D005242 1.6e-25 120.2 124 48.4
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 1.6e-25 120.2 128 49.2
Sp6g17670 Schrenkiella parvula HOM05D004103 ORTHO05D005242 2.1e-25 119.8 124 50.8
VMungo0540G0291 Vigna mungo HOM05D004103 ORTHO05D005242 2.7e-25 119.4 139 47.5
Thhalv10013461m.g Eutrema salsugineum HOM05D004103 ORTHO05D005242 4.6e-25 118.6 124 50.0
Lj6g0015560 Lotus japonicus HOM05D004103 ORTHO05D005242 4.6e-25 118.6 125 49.6
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 1.0e-24 117.5 126 47.6
Aa31LG3G11690 Aethionema arabicum HOM05D004103 ORTHO05D005242 1.3e-24 117.1 121 47.9
AL8G31340 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 1.3e-24 117.1 124 48.4
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 1.3e-24 117.1 126 46.0
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.3e-24 117.1 129 45.0
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 1.7e-24 116.7 129 44.2
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.7e-24 116.7 129 44.2
Medtr3g460800 Medicago truncatula HOM05D004103 ORTHO05D005242 2.3e-24 116.3 122 46.7
TPR.G796 Trifolium pratense HOM05D004103 ORTHO05D005242 2.3e-24 116.3 122 46.7
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 3.0e-24 115.9 131 47.3
BolC3t14049H Brassica oleracea HOM05D004103 ORTHO05D005242 5.1e-24 115.2 125 49.6
Carub.0008s1614 Capsella rubella HOM05D004103 ORTHO05D005242 5.1e-24 115.2 125 48.0
BcaB01g04374 Brassica carinata HOM05D004103 ORTHO05D005242 8.6e-24 114.4 124 48.4
Lj6g0008173 Lotus japonicus HOM05D004103 ORTHO05D005242 8.6e-24 114.4 114 50.9
BraA03t10686Z Brassica rapa HOM05D004103 ORTHO05D005242 1.1e-23 114.0 125 49.6
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 1.5e-23 113.6 125 49.6
A03p13830 Brassica napus HOM05D004103 ORTHO05D005242 1.9e-23 113.2 125 49.6
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.9e-23 113.2 121 51.2
Sed0001626 Sechium edule HOM05D004103 ORTHO05D005242 1.9e-23 113.2 123 48.0
BcaC01g06391 Brassica carinata HOM05D004103 ORTHO05D005242 2.5e-23 112.8 125 48.8
C03p16270 Brassica napus HOM05D004103 ORTHO05D005242 2.5e-23 112.8 125 48.8
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 4.3e-23 112.1 125 49.6
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 5.6e-23 111.7 130 48.5
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 1.2e-22 110.5 129 45.0
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 1.6e-22 110.2 128 43.8
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 1.6e-22 110.2 125 43.2
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 1.6e-22 110.2 129 48.1
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 2.1e-22 109.8 126 47.6
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 8.1e-22 107.8 127 50.4
FAN16G2423 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.4e-21 107.1 118 45.8
FAN16G2922 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.4e-21 107.1 118 45.8
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.1e-21 105.9 125 42.4
Lalb_Chr15g0082151 Lupinus albus HOM05D004103 ORTHO05D005242 4.0e-21 105.5 122 45.1
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 8.9e-21 104.4 121 46.3
CANSAT11G1558 Cannabis sativa HOM05D004103 ORTHO05D005242 1.2e-20 104.0 129 45.7
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 4.4e-20 102.1 122 44.3
Sc03g0011390 Simmondsia chinensis HOM05D004103 ORTHO05D005242 5.8e-20 101.7 121 43.8
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 9.9e-20 100.9 116 44.0
PGSC0003DMG400022278 Solanum tuberosum HOM05D004103 ORTHO05D005242 4.9e-19 98.6 113 45.1
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 8.4e-19 97.8 116 45.7
Lj1A890G48 Lonicera japonica HOM05D004103 ORTHO05D005242 1.1e-18 97.4 129 44.2
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 1.1e-18 97.4 114 44.7
Sopen07g033750 Solanum pennellii HOM05D004103 ORTHO05D005242 1.9e-18 96.7 114 44.7
Nitab4.5_0009777g0010 Nicotiana tabacum HOM05D004103 ORTHO05D005242 7.1e-18 94.7 116 44.8
AUR62017106 Chenopodium quinoa HOM05D004103 ORTHO05D005242 1.6e-17 93.6 111 45.0
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 1.6e-17 93.6 121 44.6
EL10Ac4g07564 Beta vulgaris HOM05D004103 ORTHO05D005242 2.1e-17 93.2 111 44.1
AUR62036459 Chenopodium quinoa HOM05D004103 ORTHO05D005242 3.5e-17 92.4 111 44.1
Lj1A797G65 Lonicera japonica HOM05D004103 ORTHO05D005242 3.5e-17 92.4 87 49.4
BcaB01g04371 Brassica carinata HOM05D004103 ORTHO05D005242 7.8e-17 91.3 125 45.6
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 3.0e-16 89.4 142 38.7
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 5.1e-16 88.6 127 38.6
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 5.1e-16 88.6 120 42.5
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 1.1e-15 87.4 92 44.6
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 1.5e-15 87.0 120 41.7
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 2.5e-15 86.3 113 44.2
Dinv21305 Davidia involucrata HOM05D004103 ORTHO05D005242 2.5e-15 86.3 140 35.7
Hund06463 Selenicereus undatus HOM05D004103 ORTHO05D005242 4.3e-15 85.5 114 38.6
DCAR_019676 Daucus carota HOM05D004103 ORTHO05D005242 5.6e-15 85.1 95 43.2
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 2.1e-14 83.2 93 43.0
ECA246G0435 Erigeron canadensis HOM05D004103 ORTHO05D005242 3.6e-14 82.4 116 37.1
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 4.8e-14 82.0 107 40.2
Sc21g0000570 Simmondsia chinensis HOM05D004103 ORTHO05D005242 8.1e-14 81.3 90 43.3
EL10Ac9g22672 Beta vulgaris HOM05D004103 ORTHO05D005242 2.4e-13 79.7 94 39.4
CDE10G0035 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 4.0e-13 79.0 125 40.0
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 5.3e-13 78.6 86 45.3
Oeu037219.1 Olea europaea HOM05D004103 ORTHO05D005242 1.5e-12 77.0 122 38.5
unitig_747.g21638 Utricularia gibba HOM05D004103 ORTHO05D005242 2.0e-12 76.6 89 42.7
CSS0030605 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 2.6e-12 76.3 127 34.6
Actinidia07861 Actinidia chinensis HOM05D004103 ORTHO05D005242 4.5e-12 75.5 128 32.8
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 4.5e-12 75.5 88 40.9
Rhsim06G0177100 Rhododendron simsii HOM05D004103 ORTHO05D005242 9.9e-12 74.3 99 38.4
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 2.2e-11 73.2 119 34.5
MSTRG.18470 Avicennia marina HOM05D004103 ORTHO05D005242 4.9e-11 72.0 93 38.7
SEGI_18003 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 8.4e-11 71.2 91 37.4
PSO675G6166 Papaver somniferum HOM05D004103 ORTHO05D005242 1.1e-10 70.9 88 39.8
Ciclev10017468m.g Citrus clementina HOM05D004103 ORTHO05D005242 2.4e-10 69.7 92 41.3
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 4.2e-10 68.9 121 33.9
AL77U10060 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 5.4e-10 68.6 81 44.4
SHI10165 Sapria himalayana HOM05D004103 ORTHO05D005242 9.3e-10 67.8 99 35.4
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 3.5e-09 65.9 100 32.0
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 6.0e-09 65.1 111 33.3
CARHR269090 Cardamine hirsuta HOM05D004103 ORTHO05D005242 7.9e-09 64.7 103 37.9
HPP92_018200 Vanilla planifolia HOM05D004103 ORTHO05D005242 1.8e-08 63.5 87 43.7
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 3.9e-08 62.4 110 30.9
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 3.9e-08 62.4 92 37.0
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 7.4e-07 58.2 92 34.8
Duzib150G0114 Durio zibethinus HOM05D001941 ORTHO05D026419 1.6e-06 57.0 34 73.5
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.1e-06 54.7 59 47.5
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.1e-06 54.7 59 47.5


User provided reference genes

Program Settings