Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 0.0e+00 1389.4 726 100.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 2.1e-260 902.5 704 69.0
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 5.3e-256 887.9 704 68.5
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.4e-251 873.2 703 66.4
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.1e-248 862.1 697 67.6
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.7e-247 857.4 702 66.8
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.7e-247 857.4 702 67.4
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-246 857.1 696 66.8
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 5.0e-246 854.7 703 65.1
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 8.5e-246 854.0 698 66.9
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.2e-244 850.1 696 65.1
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.6e-244 849.7 697 65.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.0e-244 847.4 702 65.4
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.0e-243 847.0 702 65.8
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.5e-242 843.2 720 64.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.7e-241 839.7 696 65.7
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.8e-241 838.2 702 65.4
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.1e-240 837.0 698 65.3
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.4e-240 836.6 698 65.9
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.6e-239 833.2 713 64.5
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 2.7e-239 832.4 688 65.3
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 7.7e-239 830.9 705 65.0
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.3e-238 830.1 703 64.2
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 6.5e-238 827.8 697 65.1
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.2e-237 825.5 703 63.3
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 7.2e-237 824.3 696 64.4
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.6e-236 822.0 702 64.0
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 6.1e-236 821.2 703 63.6
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-234 816.6 705 63.0
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-233 813.5 714 62.7
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.8e-232 809.7 702 63.7
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.4e-232 809.3 696 63.6
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 4.1e-232 808.5 705 63.5
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.5e-231 805.4 727 62.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.3e-230 802.7 695 63.7
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.0e-230 801.6 703 63.7
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.6e-229 798.1 705 62.8
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 3.6e-228 795.4 700 62.9
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.6e-228 795.4 702 63.1
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.7e-228 795.0 702 61.7
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.7e-228 795.0 701 62.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-227 793.9 703 63.6
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.0e-227 793.9 695 63.5
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 4.0e-227 792.0 700 62.6
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.0e-226 789.6 702 61.5
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.5e-226 787.7 696 62.4
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.5e-226 787.7 702 62.5
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 8.3e-225 784.3 696 62.4
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.3e-222 776.2 707 61.5
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.1e-221 773.9 699 61.5
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 9.5e-221 770.8 696 62.4
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.8e-220 769.2 715 59.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 6.2e-220 768.1 707 61.1
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.3e-219 766.1 713 60.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.1e-219 765.8 703 62.4
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 4.0e-219 765.4 702 59.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-218 763.8 696 60.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 7.5e-218 761.1 707 62.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.7e-217 758.8 698 61.3
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.1e-216 757.3 708 61.3
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 3.2e-216 755.7 694 59.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.6e-215 753.4 695 60.3
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.0e-214 750.7 710 59.7
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 3.9e-214 748.8 709 61.4
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 8.6e-214 747.7 702 60.8
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.1e-213 747.3 702 60.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.5e-213 746.1 702 61.3
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.5e-213 746.1 702 61.3
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.3e-213 745.7 698 59.6
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.3e-213 745.3 697 61.1
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 5.6e-213 745.0 703 61.6
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.8e-212 742.7 700 58.3
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.8e-212 742.7 703 58.0
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 3.6e-212 742.3 712 59.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 8.1e-212 741.1 709 60.8
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 2.0e-210 736.5 702 60.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 2.0e-210 736.5 698 59.3
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 4.4e-210 735.3 703 60.6
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.4e-210 735.3 703 60.6
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 4.4e-210 735.3 698 59.7
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 9.8e-210 734.2 704 60.4
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.3e-209 733.8 704 59.2
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 8.3e-209 731.1 702 60.7
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 3.5e-207 725.7 699 58.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 6.6e-206 721.5 700 57.4
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.1e-205 720.7 698 58.9
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.6e-204 716.8 713 57.9
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 4.7e-204 715.3 700 57.6
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 6.2e-204 714.9 697 57.8
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.6e-202 709.5 698 57.3
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.4e-202 708.8 705 56.5
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 8.4e-201 704.5 704 55.8
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.2e-200 702.6 700 57.9
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.2e-199 700.7 698 56.7
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 2.7e-199 699.5 698 55.7
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.0e-198 697.6 698 56.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 5.2e-195 685.3 708 56.4
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 8.9e-195 684.5 702 54.6
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.9e-193 678.7 858 48.3
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.2e-191 674.1 702 54.7
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.6e-191 672.2 702 54.4
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.3e-190 670.6 698 55.0
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.3e-190 669.8 704 54.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 5.1e-190 668.7 703 56.2
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.9e-189 666.8 717 55.1
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 6.2e-188 661.8 706 55.0
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.4e-184 649.8 713 54.7
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.0e-182 644.4 700 52.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.4e-179 634.0 704 52.6
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 2.4e-179 633.3 709 54.4
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.2e-178 630.9 629 56.6
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-177 627.1 699 52.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 2.2e-177 626.7 702 54.6
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.4e-176 624.0 697 53.2
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.7e-175 619.8 714 53.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.8e-174 617.1 710 52.1
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 3.0e-174 616.3 698 54.9
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.8e-171 607.1 710 51.0
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.5e-168 596.7 713 52.2
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.1e-167 593.6 699 51.5
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.1e-157 561.2 707 49.5
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 6.9e-155 552.0 712 49.0
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.6e-151 539.7 388 74.0
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.1e-147 525.0 373 74.8
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-145 521.2 697 48.6
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 3.2e-144 516.5 611 50.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 6.3e-140 502.3 728 46.8
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.1e-136 491.5 375 69.1
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.1e-136 491.5 375 69.1
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.6e-133 480.3 319 80.3
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.9e-128 464.2 715 43.2
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 8.0e-127 458.8 321 74.1
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 3.7e-124 449.9 546 50.0
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 2.2e-100 370.9 378 54.5
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.9e-99 367.9 377 54.9
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 9.5e-96 355.5 740 38.4
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.6e-95 353.6 743 37.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-94 351.7 634 39.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 8.3e-92 342.4 478 45.4
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.6e-90 338.2 543 40.5
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.2e-87 328.6 377 49.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 8.1e-87 325.9 775 35.2
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.1e-63 246.1 411 44.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 5.3e-62 243.4 508 35.6
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 2.8e-55 221.1 326 42.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 6.9e-54 216.5 338 39.9
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.5e-53 215.3 586 32.8
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-52 212.2 151 76.8
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.1e-50 204.9 340 40.0
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.5e-43 181.4 255 46.3
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.4e-40 169.9 218 45.0
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.2e-39 168.3 164 57.3
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.8e-39 167.9 245 40.8
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-38 164.9 166 56.6
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.7e-31 142.1 393 29.3
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.5e-29 134.0 371 29.9
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.1e-24 119.4 69 87.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 3.3e-24 117.9 69 87.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 4.8e-23 114.0 455 27.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.6e-18 99.0 62 82.3
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.6e-18 97.8 81 54.3
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.0e-17 94.4 91 57.1
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.7e-17 93.6 91 57.1
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-17 93.2 57 86.0
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-17 93.2 170 36.5
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.3e-15 89.4 51 88.2
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 3.7e-15 87.8 56 78.6
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.4e-14 85.9 51 84.3
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 1.5e-11 75.9 101 46.5
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.2e-08 66.2 59 57.6
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 8.3e-07 60.1 367 22.1


User provided reference genes

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