Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 0.0e+00 1207.6 617 100.0
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.7e-261 905.2 621 74.7
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 8.0e-261 903.7 625 74.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.9e-254 882.5 617 71.8
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 9.4e-254 880.2 618 72.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.2e-251 873.2 619 70.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.5e-251 872.8 616 73.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.4e-251 871.3 619 72.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.8e-250 868.6 618 71.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.8e-250 868.6 622 71.7
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 4.8e-250 867.8 611 72.8
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 6.3e-250 867.5 610 72.6
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 4.1e-249 864.8 611 72.8
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 4.1e-249 864.8 611 72.7
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.6e-248 862.8 622 72.2
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.9e-247 858.6 605 72.4
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.6e-247 857.4 609 72.4
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.3e-246 855.1 612 71.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 9.5e-246 853.6 615 71.5
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 9.5e-246 853.6 614 70.0
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.2e-245 853.2 608 72.9
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.8e-245 852.0 610 70.0
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 6.1e-245 850.9 610 69.5
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 6.8e-244 847.4 612 71.2
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.4e-243 845.1 607 71.8
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 5.7e-243 844.3 581 73.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 5.7e-243 844.3 615 69.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 7.5e-243 844.0 619 70.6
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.3e-242 843.2 616 69.0
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.2e-242 842.4 617 69.0
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 6.3e-242 840.9 614 70.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 6.3e-242 840.9 618 69.1
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.4e-241 839.7 616 70.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.0e-240 835.9 615 69.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 7.8e-240 833.9 619 67.7
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 7.8e-240 833.9 652 65.8
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.7e-239 832.8 617 69.7
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.7e-239 832.8 616 70.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.9e-239 832.0 616 69.0
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.6e-239 830.9 616 69.0
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 5.6e-238 827.8 613 68.5
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.2e-237 826.6 570 73.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.1e-237 825.9 616 68.7
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.8e-237 825.5 622 68.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 3.6e-237 825.1 611 68.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 6.1e-237 824.3 607 70.3
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 3.1e-236 822.0 618 67.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 4.0e-236 821.6 635 66.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.2e-235 820.1 619 68.7
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.4e-235 818.5 616 68.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 3.4e-235 818.5 619 68.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 5.8e-235 817.8 622 67.4
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.7e-234 816.2 619 66.9
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.1e-233 813.5 615 66.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.9e-230 802.7 623 66.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.6e-230 801.2 648 64.8
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.2e-229 800.0 622 66.4
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 2.1e-229 799.3 623 66.3
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 8.0e-229 797.3 620 66.8
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.0e-228 795.0 614 64.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 8.9e-228 793.9 636 64.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.4e-225 785.8 619 66.4
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.6e-224 783.1 619 64.9
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.1e-224 782.7 617 65.8
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 4.6e-224 781.6 618 64.7
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.0e-223 780.4 624 64.3
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.0e-223 780.4 622 64.6
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.5e-222 776.5 618 63.9
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.6e-221 773.1 619 65.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 3.6e-221 771.9 554 71.1
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 3.1e-220 768.8 622 63.7
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 6.8e-220 767.7 614 63.8
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 8.9e-220 767.3 624 64.6
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 2.0e-219 766.1 609 63.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 4.4e-219 765.0 602 65.6
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 7.5e-219 764.2 614 63.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.9e-218 762.3 620 62.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.9e-218 761.5 620 63.7
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.1e-217 760.4 620 63.5
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 4.1e-217 758.4 620 63.4
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 5.4e-217 758.1 606 63.0
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.7e-216 755.7 611 62.8
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 3.0e-215 752.3 619 62.7
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.9e-215 751.9 611 62.5
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.1e-214 750.4 613 63.0
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 4.3e-214 748.4 619 64.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.5e-211 740.0 634 60.7
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.4e-211 738.8 624 62.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.8e-210 735.3 610 61.8
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.9e-209 733.0 611 61.0
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 7.1e-209 731.1 620 60.2
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 2.7e-208 729.2 613 62.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 6.0e-208 728.0 615 62.6
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.0e-208 728.0 615 62.6
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.0e-208 728.0 615 62.9
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.3e-207 726.9 613 62.6
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.3e-207 726.1 608 61.5
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 5.6e-206 721.5 629 60.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-205 719.2 615 62.3
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.1e-204 717.2 615 62.1
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.0e-204 715.3 624 60.1
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.7e-202 709.9 613 59.9
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.9e-202 709.1 626 59.6
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.2e-201 705.3 614 61.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.1e-201 704.5 609 59.3
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.6e-200 703.4 617 60.3
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.8e-197 691.8 537 63.7
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.8e-197 691.8 607 61.1
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 4.8e-197 691.8 539 65.7
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.1e-196 690.6 617 59.6
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.7e-194 683.3 621 58.5
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.8e-194 682.2 616 59.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.5e-190 670.2 613 57.6
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 3.7e-189 665.6 617 57.1
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 8.1e-189 664.5 594 58.1
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.1e-185 654.1 609 58.3
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-180 635.2 605 56.0
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 6.7e-175 618.2 619 54.4
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.6e-171 606.3 637 52.9
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 2.9e-170 602.8 608 52.8
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.9e-169 600.1 615 52.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.1e-164 582.8 490 62.0
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.6e-163 579.7 610 53.6
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.6e-155 553.1 623 49.4
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.6e-147 526.6 452 59.5
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 9.1e-140 501.5 623 47.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 3.5e-131 473.0 409 62.6
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.6e-121 439.1 317 68.8
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.6e-120 437.6 529 47.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.0e-119 434.9 474 48.3
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.9e-117 426.8 757 36.9
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.4e-116 424.5 333 65.2
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.3e-111 407.1 374 58.3
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.4e-108 397.1 625 40.0
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.7e-98 364.4 369 54.2
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 4.8e-88 329.7 283 61.8
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.3e-80 305.1 658 32.1
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 7.4e-73 279.3 224 62.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.9e-68 264.6 199 68.3
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.2e-68 263.8 651 31.8
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.7e-67 260.8 187 69.0
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.1e-58 229.9 168 65.5
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.5e-57 227.6 136 74.3
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 9.7e-49 199.1 122 80.3
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 4.8e-48 196.8 391 36.8
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 4.4e-41 173.7 113 77.0
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.7e-41 173.3 113 76.1
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.6e-38 164.5 136 62.5
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.1e-33 149.1 96 77.1
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.3e-33 147.5 96 76.0
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.8e-32 144.4 184 48.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.2e-29 134.8 224 42.4
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-28 132.1 130 55.4
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 3.2e-28 131.0 80 76.2
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 2.3e-26 124.8 79 70.9
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 4.4e-25 120.6 122 55.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.4e-23 115.5 82 64.6
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 7.2e-20 103.2 137 46.7
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.3e-18 98.2 65 69.2
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 4.4e-17 94.0 120 49.2
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 2.7e-14 84.7 56 64.3
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 2.3e-13 81.6 70 55.7
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-09 69.3 149 30.9
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 3.7e-08 64.3 72 51.4
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 8.3e-08 63.2 38 81.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 1.8e-07 62.0 61 57.4
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 2.0e-06 58.5 100 40.0


User provided reference genes

Program Settings