Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1028.1 Carica papaya HOM05D002794 ORTHO05D022239 3.0e-39 165.2 120 100.0
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 5.5e-17 91.3 120 68.3
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 7.2e-17 90.9 126 63.5
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 1.0e-15 87.0 120 57.5
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 1.4e-15 86.7 120 62.5
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.0e-14 82.8 121 57.0
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 2.6e-14 82.4 121 59.5
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 4.4e-14 81.6 120 69.2
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 5.7e-14 81.3 122 57.4
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 7.5e-14 80.9 124 62.9
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 2.8e-13 79.0 121 54.5
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 4.8e-13 78.2 121 56.2
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 4.8e-13 78.2 132 54.5
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 4.8e-13 78.2 121 60.3
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 8.3e-13 77.4 123 65.9
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.1e-12 77.0 53 75.5
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 1.1e-12 77.0 59 67.8
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 1.4e-12 76.6 60 68.3
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 1.4e-12 76.6 60 68.3
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.4e-12 76.6 117 47.9
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 1.8e-12 76.3 123 59.3
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 2.4e-12 75.9 124 58.9
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 3.1e-12 75.5 117 52.1
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 3.1e-12 75.5 130 55.4
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 3.1e-12 75.5 131 56.5
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 4.1e-12 75.1 120 52.5
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 4.1e-12 75.1 126 54.0
vmacro03844 Vaccinium macrocarpon HOM05D002794 ORTHO05D022239 4.1e-12 75.1 59 69.5
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 5.4e-12 74.7 123 62.6
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 7.0e-12 74.3 122 56.6
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 1.2e-11 73.6 117 53.0
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 1.2e-11 73.6 117 53.0
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 1.2e-11 73.6 117 56.4
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 2.0e-11 72.8 54 72.2
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 2.0e-11 72.8 54 72.2
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 2.7e-11 72.4 53 71.7
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 2.7e-11 72.4 52 73.1
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 2.7e-11 72.4 121 66.9
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.7e-11 72.4 51 70.6
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 3.5e-11 72.0 115 51.3
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 4.5e-11 71.6 51 64.7
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 4.5e-11 71.6 57 63.2
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 4.5e-11 71.6 120 56.7
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 5.9e-11 71.2 52 73.1
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 5.9e-11 71.2 52 71.2
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 5.9e-11 71.2 101 64.4
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 5.9e-11 71.2 118 54.2
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.7e-11 70.9 54 68.5
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 7.7e-11 70.9 53 69.8
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 1.0e-10 70.5 60 55.0
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 1.0e-10 70.5 121 52.1
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 1.3e-10 70.1 117 53.0
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 1.3e-10 70.1 52 69.2
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 1.3e-10 70.1 120 51.7
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 1.7e-10 69.7 54 66.7
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.3e-10 69.3 54 66.7
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.9e-10 68.9 52 71.2
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 3.8e-10 68.6 52 67.3
RhsimUnG0043900 Rhododendron simsii HOM05D002794 ORTHO05D022239 3.8e-10 68.6 60 63.3
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 5.0e-10 68.2 53 66.0
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 5.0e-10 68.2 60 60.0
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 5.0e-10 68.2 60 60.0
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 6.6e-10 67.8 51 58.8
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 6.6e-10 67.8 56 66.1
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 6.6e-10 67.8 60 58.3
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 6.6e-10 67.8 124 50.8
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 6.6e-10 67.8 52 67.3
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 6.6e-10 67.8 52 67.3
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 6.6e-10 67.8 60 58.3
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 8.6e-10 67.4 110 51.8
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 8.6e-10 67.4 50 70.0
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.5e-09 66.6 51 70.6
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.5e-09 66.6 51 70.6
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.5e-09 66.6 52 67.3
Medtr2g072100 Medicago truncatula HOM05D002794 ORTHO05D022239 1.9e-09 66.2 54 66.7
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.9e-09 66.2 50 70.0
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.9e-09 66.2 121 63.6
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 1.9e-09 66.2 57 63.2
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 2.5e-09 65.9 54 66.7
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.5e-09 65.9 121 58.7
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 2.5e-09 65.9 52 67.3
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 3.3e-09 65.5 117 45.3
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 3.3e-09 65.5 58 63.8
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 4.2e-09 65.1 60 55.0
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 4.2e-09 65.1 41 75.6
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 7.2e-09 64.3 52 61.5
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 9.5e-09 63.9 60 58.3
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 1.2e-08 63.5 120 59.2
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.2e-08 63.5 53 66.0
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 1.6e-08 63.2 123 49.6
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 2.1e-08 62.8 53 60.4
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 2.8e-08 62.4 54 55.6
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 2.8e-08 62.4 123 48.0
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 2.8e-08 62.4 42 78.6
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 3.6e-08 62.0 54 61.1
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 3.6e-08 62.0 40 80.0
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 3.6e-08 62.0 45 75.6
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 6.1e-08 61.2 50 66.0
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 8.0e-08 60.8 50 70.0
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 1.0e-07 60.5 53 60.4
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 1.4e-07 60.1 49 57.1
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.4e-07 60.1 54 53.7
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 1.4e-07 60.1 54 53.7
Lalb_Chr16g0383571 Lupinus albus HOM05D002794 ORTHO05D003763 1.4e-07 60.1 120 36.7
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 1.8e-07 59.7 43 72.1
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.8e-07 59.7 53 60.4
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 2.3e-07 59.3 57 56.1
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 3.0e-07 58.9 63 54.0
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 5.2e-07 58.2 49 59.2
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 6.8e-07 57.8 57 57.9
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 8.9e-07 57.4 54 55.6
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 8.9e-07 57.4 53 58.5
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.2e-06 57.0 58 60.3
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.5e-06 56.6 52 65.4
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.0e-06 56.2 51 56.9
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 2.0e-06 56.2 60 50.0
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 4.4e-06 55.1 60 55.0
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 7.5e-06 54.3 48 60.4


User provided reference genes

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