Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.8e-254 882.1 436 100.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 6.1e-130 468.4 429 57.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.2e-127 459.9 430 56.3
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.3e-124 450.7 410 56.8
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 9.7e-120 434.5 396 56.6
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.7e-119 432.6 409 55.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 4.8e-119 432.2 414 56.8
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-118 429.5 400 56.0
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.3e-116 424.1 361 59.0
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.9e-115 420.2 364 57.1
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.6e-114 417.2 392 55.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-114 416.8 403 53.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.6e-114 416.0 410 54.4
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.0e-113 414.5 401 53.9
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.7e-111 407.1 424 51.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.1e-110 404.4 456 49.3
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.0e-110 401.7 356 55.9
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 9.1e-110 401.4 356 55.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.2e-109 401.0 424 50.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.5e-109 400.6 395 53.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.5e-109 400.6 431 50.1
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.5e-107 393.3 426 49.8
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.2e-106 391.0 354 56.2
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 3.6e-106 389.4 435 48.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.0e-106 388.3 431 48.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.0e-105 387.9 442 46.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.0e-105 386.3 431 48.0
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.7e-105 385.2 431 47.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 8.8e-105 384.8 354 54.0
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-104 384.4 431 48.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.5e-104 384.0 413 48.4
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 9.7e-104 381.3 430 47.2
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 2.4e-102 376.7 407 49.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.0e-101 373.6 354 53.1
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 7.7e-101 371.7 389 48.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 7.7e-101 371.7 376 53.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.3e-100 370.9 392 48.5
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.7e-100 370.5 434 47.2
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-100 370.5 415 49.9
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.9e-100 369.8 366 53.0
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.5e-100 368.6 372 53.8
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 8.5e-100 368.2 414 49.8
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.1e-99 367.9 399 48.1
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.9e-99 367.1 355 54.4
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.2e-99 366.3 363 53.4
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 3.2e-99 366.3 340 56.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 4.2e-99 365.9 354 53.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 7.2e-99 365.2 363 52.6
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 7.2e-99 365.2 345 53.3
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.1e-98 363.6 366 51.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 3.6e-98 362.8 405 49.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 8.0e-98 361.7 411 51.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.8e-97 360.5 347 51.9
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.3e-97 360.1 363 53.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 5.2e-97 359.0 415 47.5
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 5.2e-97 359.0 347 51.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 8.8e-97 358.2 420 48.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-96 357.5 403 47.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 4.4e-96 355.9 366 50.5
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.1e-94 351.3 363 52.3
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 5.4e-94 349.0 432 44.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 5.4e-94 349.0 385 46.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.7e-93 346.7 405 47.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 4.5e-93 345.9 412 47.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 5.0e-92 342.4 353 49.6
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 8.5e-92 341.7 325 51.7
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.5e-91 340.9 345 50.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.1e-90 337.0 380 47.4
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.6e-90 336.3 399 45.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.4e-89 334.3 424 46.0
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 8.8e-89 331.6 400 44.0
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-88 331.3 430 43.0
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.0e-88 330.5 354 49.7
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.7e-87 327.4 443 43.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 6.3e-87 325.5 351 49.3
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.5e-85 319.7 349 47.9
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 7.7e-85 318.5 379 49.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.0e-84 318.2 349 47.9
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.0e-84 318.2 404 45.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.2e-83 312.8 391 45.5
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 7.2e-83 312.0 427 41.2
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.8e-81 307.4 349 47.0
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.7e-79 300.8 356 45.2
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.9e-76 290.0 249 59.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 8.9e-73 278.5 352 44.3
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 7.0e-70 268.9 339 42.2
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.0e-69 267.3 312 45.5
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 6.0e-69 265.8 309 46.9
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 5.0e-68 262.7 248 58.5
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.1e-67 261.5 332 41.0
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 7.3e-67 258.8 285 50.2
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 7.5e-64 248.8 313 45.4
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-63 248.1 239 52.7
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.9e-63 246.9 366 38.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.4e-62 243.8 259 49.4
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 9.2e-62 241.9 246 52.8
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.1e-61 240.7 350 41.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.7e-61 240.4 350 41.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 6.6e-60 235.7 355 39.2
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.3e-59 233.4 355 41.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.9e-55 220.3 210 55.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 5.2e-49 199.5 394 34.3
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.7e-47 194.5 419 32.9
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.7e-44 184.5 270 40.7
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 9.9e-40 168.7 157 54.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.4e-38 164.1 304 34.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.0e-33 146.7 118 57.6
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 6.7e-28 129.4 95 61.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 6.2e-26 122.9 151 47.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.5e-19 100.9 88 59.1
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.8e-18 97.4 84 59.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.2e-13 82.0 249 27.7
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.1e-13 81.3 96 42.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.2e-10 71.2 60 65.0
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 1.1e-09 68.9 57 64.9
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 5.3e-09 66.6 47 61.7
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.4e-06 58.5 69 50.7


User provided reference genes

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