Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.0e-113 412.5 223 100.0
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 5.4e-50 201.8 141 68.8
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.0e-48 197.6 123 74.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.5e-47 193.7 147 63.9
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 5.6e-47 191.8 147 61.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 7.3e-47 191.4 149 65.8
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.5e-47 191.0 143 63.6
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.8e-46 189.5 146 65.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 6.2e-46 188.3 163 59.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 8.1e-46 188.0 132 66.7
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.4e-45 187.2 163 57.7
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.3e-45 186.4 152 59.9
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 4.0e-45 185.7 137 66.4
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.0e-45 185.7 124 69.4
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-44 184.1 126 67.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.2e-44 184.1 114 74.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.5e-44 183.7 141 63.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.5e-44 183.7 126 67.5
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 2.0e-44 183.3 121 66.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.6e-44 183.0 114 71.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.4e-44 182.2 155 56.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.3e-43 180.6 126 65.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 2.2e-43 179.9 145 61.4
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.4e-43 178.3 111 70.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.4e-43 177.9 149 57.0
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.1e-42 177.6 148 59.5
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.4e-42 177.2 97 76.3
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 3.2e-42 176.0 142 62.0
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 5.4e-42 175.3 103 70.9
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.7e-41 172.9 195 54.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 4.6e-41 172.2 105 67.6
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-40 170.2 118 66.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.3e-40 169.9 162 53.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.3e-40 169.9 129 62.0
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 3.0e-40 169.5 124 63.7
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.9e-40 169.1 144 55.6
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 5.1e-40 168.7 117 65.0
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 5.1e-40 168.7 124 63.7
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 6.6e-40 168.3 148 54.7
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.1e-39 167.5 148 54.7
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-39 167.2 130 61.5
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-39 167.2 130 61.5
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.5e-39 167.2 142 53.5
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.5e-39 166.4 135 60.7
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.3e-39 166.0 146 57.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.3e-39 165.6 130 61.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 7.3e-39 164.9 130 60.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.2e-38 164.1 147 55.8
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.8e-38 162.9 147 55.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.8e-38 162.9 110 68.2
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 4.7e-38 162.2 133 57.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 6.2e-38 161.8 148 54.1
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 6.2e-38 161.8 114 63.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.1e-37 161.0 145 55.2
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.1e-37 161.0 123 58.5
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.4e-37 159.8 120 64.2
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 8.9e-37 157.9 150 52.7
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.0e-36 156.8 117 59.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.6e-36 156.4 127 59.8
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.6e-36 156.4 105 64.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.6e-36 156.4 122 58.2
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.4e-36 156.0 126 58.7
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.4e-36 155.6 116 61.2
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 5.8e-36 155.2 122 58.2
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 7.6e-36 154.8 147 53.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.7e-35 153.7 99 65.7
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.2e-35 153.3 98 69.4
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.2e-35 153.3 111 62.2
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.4e-35 151.8 134 50.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 8.4e-35 151.4 109 64.2
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.1e-34 151.0 135 55.6
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.4e-34 149.8 168 51.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.2e-34 149.4 119 57.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.2e-34 149.4 119 57.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.2e-34 149.4 112 58.9
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.1e-33 146.7 111 59.5
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.7e-32 143.7 122 56.6
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 3.0e-32 142.9 125 52.8
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.5e-31 139.8 93 63.4
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.3e-31 139.4 89 62.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 9.6e-31 137.9 105 57.1
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 3.6e-30 136.0 127 52.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.2e-28 131.0 102 56.9
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.8e-28 128.6 109 59.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 3.8e-27 125.9 100 54.0
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-26 124.4 130 48.5
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.2e-26 122.5 112 53.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.4e-26 122.1 212 36.3
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.1e-26 121.7 109 53.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 9.3e-26 121.3 109 56.9
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.3e-24 116.7 115 48.7
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.7e-24 115.2 118 46.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 8.7e-24 114.8 129 47.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.5e-23 113.2 145 38.6
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.3e-23 112.8 134 44.0
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.8e-22 109.8 70 72.9
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.8e-22 109.0 99 47.5
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.1e-21 107.8 99 53.5
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.4e-21 106.7 81 54.3
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.0e-20 103.6 140 42.1
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.6e-20 103.2 100 51.0
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.3e-19 100.9 131 45.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.4e-18 97.4 142 43.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.4e-18 97.4 86 50.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.4e-18 97.4 85 44.7
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.4e-18 97.4 89 46.1
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.9e-18 97.1 74 55.4
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.2e-17 94.4 158 36.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.1e-17 93.6 143 36.4
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.5e-17 92.8 111 42.3
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.5e-15 87.4 100 43.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 7.4e-15 85.1 87 42.5
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.8e-14 82.4 76 51.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 4.8e-14 82.4 93 36.6
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 9.0e-13 78.2 98 37.8
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.0e-13 78.2 75 46.7
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.0e-13 78.2 75 46.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.0e-13 78.2 76 47.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.5e-12 77.4 69 46.4
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.0e-12 77.0 72 44.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 4.5e-12 75.9 66 59.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 5.8e-12 75.5 69 43.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.2e-10 69.7 92 39.1
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.2e-10 69.7 115 32.2
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.1e-09 67.0 46 58.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.0e-09 65.5 71 46.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.3e-08 64.3 45 64.4
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.3e-08 64.3 64 51.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.3e-08 64.3 92 31.5
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.9e-07 60.5 34 70.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.6e-06 57.4 50 50.0
Haze_00433 Corylus avellana HOM05D000082 ORTHO05D000038 6.3e-06 55.5 46 50.0


User provided reference genes

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