Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 6.8e-72 273.9 136 100.0
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 5.1e-67 257.7 136 92.6
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.6e-67 257.3 136 92.6
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.5e-66 256.1 136 91.9
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.5e-66 256.1 136 91.9
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.9e-66 255.8 136 91.9
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.5e-66 255.4 136 91.9
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 4.3e-66 254.6 132 93.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.6e-66 254.2 136 90.4
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 7.3e-66 253.8 135 91.1
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 9.5e-66 253.4 136 90.4
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.8e-65 251.9 136 90.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 2.8e-65 251.9 136 91.2
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 4.7e-65 251.1 136 90.4
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 6.2e-65 250.8 136 90.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 6.2e-65 250.8 136 89.7
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 8.1e-65 250.4 136 89.7
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 8.1e-65 250.4 133 91.0
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-64 249.6 136 89.7
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-64 249.6 136 89.7
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.8e-64 249.2 136 90.4
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.4e-64 248.8 136 91.9
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.8e-64 247.3 133 91.0
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.8e-64 247.3 136 89.7
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.8e-64 247.3 136 89.7
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 6.8e-64 247.3 136 88.2
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.2e-63 246.5 136 86.8
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.5e-63 246.1 134 89.6
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-63 246.1 136 87.5
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 90.2
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 90.2
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 90.2
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 90.2
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 3.4e-63 245.0 136 88.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.8e-63 244.2 131 90.1
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.6e-63 243.8 136 87.5
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.6e-63 243.8 136 87.5
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.6e-63 243.8 136 87.5
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 7.6e-63 243.8 136 88.2
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.7e-62 242.7 136 86.8
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-62 242.7 133 89.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-62 242.7 136 87.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 136 86.8
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 136 88.2
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.2e-62 242.3 136 88.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 2.9e-62 241.9 133 88.7
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-62 241.9 130 90.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-62 241.9 130 90.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 2.9e-62 241.9 136 87.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.4e-62 240.7 136 88.2
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 8.4e-62 240.4 129 90.7
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 8.4e-62 240.4 130 89.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.1e-61 240.0 129 89.9
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-61 240.0 132 88.6
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.4e-61 239.6 129 88.4
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 86.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 86.8
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 86.8
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.9e-61 239.2 130 90.0
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.2e-61 238.4 130 89.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.2e-61 238.4 130 90.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 3.2e-61 238.4 129 89.9
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 86.0
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.2e-61 238.4 137 86.1
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.1e-61 238.0 130 89.2
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 4.1e-61 238.0 129 89.1
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 83.8
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.8
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 9.2e-61 236.9 129 87.6
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 86.8
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.2e-60 236.5 130 87.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.6e-60 236.1 138 84.1
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.1e-60 235.7 129 88.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.5e-60 235.0 130 86.9
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 3.5e-60 235.0 133 85.7
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 85.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.6e-60 234.6 130 86.9
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 4.6e-60 234.6 131 87.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 85.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 4.6e-60 234.6 138 83.3
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 6.0e-60 234.2 127 89.0
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 85.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.8
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.8
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.8
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.7e-59 230.3 156 75.6
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 83.1
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.3e-58 228.4 134 82.8
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 82.4
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.2e-57 226.5 132 83.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.8e-57 225.3 128 84.4
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 9.0e-56 220.3 136 78.7
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.2e-55 219.9 136 80.1
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.4e-55 218.4 168 69.6
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 9.9e-55 216.9 168 69.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 6.4e-54 214.2 125 82.4
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.6e-52 209.5 182 62.1
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.0e-52 207.6 136 74.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.8e-52 207.2 136 75.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.0e-51 206.8 131 78.6
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.0e-51 205.3 137 78.1
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.3e-50 201.8 136 72.1
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 4.3e-50 201.4 200 56.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 7.3e-50 200.7 136 77.2
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.9e-48 194.1 133 75.9
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.0e-47 192.6 104 87.5
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.4e-47 191.8 133 65.4
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 7.6e-47 190.7 130 66.9
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.9e-46 188.0 132 68.9
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 8.4e-46 187.2 123 70.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.1e-43 177.9 144 68.8
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 3.3e-42 175.3 127 71.7
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 5.6e-42 174.5 130 63.1
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 9.6e-42 173.7 135 66.7
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.1e-37 160.2 93 87.1
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.9e-37 159.5 79 93.7
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-36 156.8 97 77.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.1e-35 151.4 80 86.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.7e-35 150.6 84 86.9
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.9e-34 149.4 85 85.9
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-33 146.7 80 85.0
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.1e-33 146.0 85 83.5
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 2.1e-33 146.0 134 63.4
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-32 142.9 89 79.8
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.1e-32 142.1 92 75.0
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.0e-32 141.7 89 78.7
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.0e-32 141.7 89 78.7
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.3e-32 141.4 85 80.0
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-31 139.4 90 75.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-30 136.7 75 84.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.3e-30 136.7 71 87.3
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.9e-29 132.9 85 80.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.2e-29 131.7 89 77.5
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 4.2e-29 131.7 105 68.6
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 68 86.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.2e-23 113.6 64 79.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.4e-23 112.1 91 63.7
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.5e-18 96.7 91 58.2
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.3e-18 95.5 91 57.1
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.3e-17 91.3 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.4e-16 89.4 45 86.7
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 3.2e-13 79.0 56 75.0
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.1e-10 70.5 41 78.0
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.2e-09 64.3 42 76.2
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-08 62.4 57 61.4


User provided reference genes

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