Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44644 Carica papaya HOM05D002509 ORTHO05D002758 6.7e-50 200.3 95 100.0
Thecc.05G067400 Theobroma cacao HOM05D002509 ORTHO05D002758 1.1e-31 139.8 79 84.8
Gorai.002G247000 Gossypium raimondii HOM05D002509 ORTHO05D002758 7.0e-31 137.1 79 83.5
Dinv03343 Davidia involucrata HOM05D002509 ORTHO05D002758 9.1e-31 136.7 79 81.0
Gohir.A01G213600 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.0e-30 135.6 79 82.3
Gohir.A09G146400 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.0e-30 135.6 79 83.5
Gohir.D09G142100 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.0e-30 135.6 79 82.3
Gorai.006G163100 Gossypium raimondii HOM05D002509 ORTHO05D002758 2.0e-30 135.6 79 82.3
COL.COLO4_26959 Corchorus olitorius HOM05D002509 ORTHO05D002758 3.5e-30 134.8 79 79.7
Duzib093G0938 Durio zibethinus HOM05D002509 ORTHO05D002758 3.5e-30 134.8 79 81.0
Sabra06G0098300 Salix brachista HOM05D002509 ORTHO05D002758 7.7e-30 133.7 79 81.0
Gohir.D01G202300 Gossypium hirsutum HOM05D002509 ORTHO05D002758 1.0e-29 133.3 79 82.3
TWI74G0772 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 5.0e-29 131.0 79 74.7
TWI53G1670 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 6.5e-29 130.6 79 74.7
Cfa016032 Carpinus fangiana HOM05D002509 ORTHO05D002758 1.1e-28 129.8 79 75.9
Haze_00426 Corylus avellana HOM05D002509 ORTHO05D002758 1.1e-28 129.8 79 75.9
Dinv29099 Davidia involucrata HOM05D002509 ORTHO05D002758 1.9e-28 129.0 79 75.9
Duzib106G0487 Durio zibethinus HOM05D002509 ORTHO05D002758 3.2e-28 128.3 79 78.5
QL09p024057 Quercus lobata HOM05D002509 ORTHO05D002758 3.2e-28 128.3 79 78.5
Potri.006G124200 Populus trichocarpa HOM05D002509 ORTHO05D002758 4.2e-28 127.9 79 78.5
CiPaw.06G031900 Carya illinoinensis HOM05D002509 ORTHO05D002758 9.4e-28 126.7 79 77.2
Atru.chr8.1799 Acer truncatum HOM05D002509 ORTHO05D002758 1.2e-27 126.3 79 72.2
MELO3C019031.2 Cucumis melo HOM05D002509 ORTHO05D002758 1.2e-27 126.3 80 77.5
Manes.08G010800 Manihot esculenta HOM05D002509 ORTHO05D002758 1.2e-27 126.3 79 75.9
Potri.016G093200 Populus trichocarpa HOM05D002509 ORTHO05D002758 1.6e-27 125.9 80 78.8
Manes.09G066000 Manihot esculenta HOM05D002509 ORTHO05D002758 2.7e-27 125.2 79 74.7
CsaV3_4G009290 Cucumis sativus L. HOM05D002509 ORTHO05D002758 3.6e-27 124.8 80 76.2
CiPaw.05G220300 Carya illinoinensis HOM05D002509 ORTHO05D002758 8.0e-27 123.6 79 74.7
Sabra16G0098500 Salix brachista HOM05D002509 ORTHO05D002758 1.0e-26 123.2 78 76.9
ClCG10G009090 Citrullus lanatus HOM05D002509 ORTHO05D002758 1.8e-26 122.5 80 75.0
Prupe.2G325800 Prunus persica HOM05D002509 ORTHO05D002758 2.3e-26 122.1 79 73.4
RcHm_v2.0_Chr1g0384181 Rosa chinensis HOM05D002509 ORTHO05D002758 2.3e-26 122.1 82 74.4
Duzib128G1563 Durio zibethinus HOM05D002509 ORTHO05D002758 3.0e-26 121.7 79 74.7
Rhsim02G0071500 Rhododendron simsii HOM05D002509 ORTHO05D002758 2.0e-25 119.0 79 73.4
Sed0012655 Sechium edule HOM05D002509 ORTHO05D002758 2.6e-25 118.6 80 73.8
Ciclev10012088m.g Citrus clementina HOM05D002509 ORTHO05D002758 4.4e-25 117.9 80 68.8
QL09p024426 Quercus lobata HOM05D002509 ORTHO05D002758 9.7e-25 116.7 79 72.2
Phvul.011G020500 Phaseolus vulgaris HOM05D002509 ORTHO05D002758 1.7e-24 115.9 79 72.2
GSVIVG01025739001 Vitis vinifera HOM05D002509 ORTHO05D002758 1.7e-24 115.9 79 72.2
CiPaw.05G220600 Carya illinoinensis HOM05D002509 ORTHO05D002758 2.8e-24 115.2 79 70.9
Nn2g13788 Nelumbo nucifera HOM05D002509 ORTHO05D002758 3.7e-24 114.8 79 68.4
arahy.Tifrunner.gnm1.ann1.46VCLG Arachis hypogaea HOM05D002509 ORTHO05D002758 6.3e-24 114.0 78 73.1
arahy.Tifrunner.gnm1.ann1.8BD1V8 Arachis hypogaea HOM05D002509 ORTHO05D002758 6.3e-24 114.0 78 73.1
TAR623G1280 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.4e-23 112.8 79 67.1
VMungo1127G1098 Vigna mungo HOM05D002509 ORTHO05D002758 2.4e-23 112.1 81 71.6
Eucgr.A01674 Eucalyptus grandis HOM05D002509 ORTHO05D002758 7.0e-23 110.5 79 67.1
MD07G1308600 Malus domestica HOM05D002509 ORTHO05D002758 9.1e-23 110.2 80 68.8
Peaxi162Scf00003g04919 Petunia axillaris HOM05D002509 ORTHO05D002758 9.1e-23 110.2 79 68.4
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 1.6e-22 109.4 81 71.6
FAN10G0165 Fragaria x ananassa HOM05D002509 ORTHO05D002758 2.0e-22 109.0 100 61.0
Cc06_g19290 Coffea canephora HOM05D002509 ORTHO05D002758 2.7e-22 108.6 79 67.1
MD01G1235700 Malus domestica HOM05D002509 ORTHO05D002758 2.7e-22 108.6 80 67.5
Nitab4.5_0004588g0040 Nicotiana tabacum HOM05D002509 ORTHO05D002758 4.5e-22 107.8 83 69.9
FAN01G1274 Fragaria x ananassa HOM05D002509 ORTHO05D002758 7.7e-22 107.1 100 60.0
FAN03G1495 Fragaria x ananassa HOM05D002509 ORTHO05D002758 7.7e-22 107.1 100 60.0
Nitab4.5_0000812g0100 Nicotiana tabacum HOM05D002509 ORTHO05D002758 7.7e-22 107.1 83 68.7
Hma1.2p1_2076F.1_g313320 Hydrangea macrophylla HOM05D002509 ORTHO05D002758 1.0e-21 106.7 80 68.8
DCAR_014999 Daucus carota HOM05D002509 ORTHO05D002758 2.2e-21 105.5 80 66.2
Oeu057786.1 Olea europaea HOM05D002509 ORTHO05D002758 2.9e-21 105.1 79 62.0
Ca_04920_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 3.8e-21 104.8 79 69.6
Lj3A986G81 Lonicera japonica HOM05D002509 ORTHO05D002758 5.0e-21 104.4 79 65.8
Glyma.11G091900 Glycine max HOM05D002509 ORTHO05D002758 1.5e-20 102.8 79 69.6
Sopen10g029090 Solanum pennellii HOM05D002509 ORTHO05D002758 1.9e-20 102.4 81 63.0
Medtr4g077803 Medicago truncatula HOM05D002509 ORTHO05D002758 2.5e-20 102.1 79 64.6
Actinidia26634 Actinidia chinensis HOM05D002509 ORTHO05D002758 4.2e-20 101.3 81 65.4
Solyc10g078430.2 Solanum lycopersicum HOM05D002509 ORTHO05D002758 4.2e-20 101.3 81 63.0
TPR.G27184 Trifolium pratense HOM05D002509 ORTHO05D002758 7.2e-20 100.5 80 67.5
arahy.Tifrunner.gnm1.ann1.GCS8UL Arachis hypogaea HOM05D002509 ORTHO05D002758 9.4e-20 100.1 79 64.6
Lj2A121T44 Lonicera japonica HOM05D002509 ORTHO05D002758 1.6e-19 99.4 81 61.7
Medtr4g077797 Medicago truncatula HOM05D002509 ORTHO05D002758 2.7e-19 98.6 81 66.7
Oeu059350.2 Olea europaea HOM05D002509 ORTHO05D002758 2.7e-19 98.6 79 62.0
TAR636G1397 Trochodendron aralioides HOM05D002509 ORTHO05D002758 3.6e-19 98.2 79 60.8
CAN.G960.59 Capsicum annuum HOM05D002509 ORTHO05D002758 4.7e-19 97.8 83 63.9
PGSC0003DMG400008373 Solanum tuberosum HOM05D002509 ORTHO05D002758 4.7e-19 97.8 81 60.5
HPP92_008487 Vanilla planifolia HOM05D002509 ORTHO05D002758 6.1e-19 97.4 81 60.5
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 1.4e-18 96.3 80 62.5
SalBow1G1286 Salvia bowleyana HOM05D002509 ORTHO05D002758 1.8e-18 95.9 78 60.3
SalBow1G2356 Salvia bowleyana HOM05D002509 ORTHO05D002758 1.8e-18 95.9 78 60.3
Migut.J01656 Erythranthe guttata HOM05D002509 ORTHO05D002758 2.3e-18 95.5 81 63.0
Lj1g0014330 Lotus japonicus HOM05D002509 ORTHO05D002758 2.3e-18 95.5 79 59.5
LjContig00247g0023433 Lotus japonicus HOM05D002509 ORTHO05D002758 4.0e-18 94.7 80 63.8
MSTRG.26160 Avicennia marina HOM05D002509 ORTHO05D002758 8.8e-18 93.6 83 57.8
Lalb_Chr19g0139961 Lupinus albus HOM05D002509 ORTHO05D002758 8.8e-18 93.6 79 62.0
SGA_v2.0_scaffold105G30291 Striga asiatica HOM05D002509 ORTHO05D002758 1.2e-17 93.2 81 61.7
Aqoxy1G01153 Aquilegia oxysepala HOM05D002509 ORTHO05D002758 2.0e-17 92.4 79 59.5
Aqoxy2G01751 Aquilegia oxysepala HOM05D002509 ORTHO05D002758 2.0e-17 92.4 80 58.8
Glyma.12G018000 Glycine max HOM05D002509 ORTHO05D002758 2.6e-17 92.0 75 66.7
Oeu059351.1 Olea europaea HOM05D002509 ORTHO05D002758 3.4e-17 91.7 74 63.5
Psat7g171840 Pisum sativum HOM05D002509 ORTHO05D002758 3.4e-17 91.7 79 62.0
CiPaw.06G032400 Carya illinoinensis HOM05D002509 ORTHO05D002758 4.4e-17 91.3 61 73.8
TPR.G27186 Trifolium pratense HOM05D002509 ORTHO05D002758 4.4e-17 91.3 79 59.5
Lalb_Chr01g0000931 Lupinus albus HOM05D002509 ORTHO05D002758 7.5e-17 90.5 79 59.5
Ca_04919_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 1.3e-16 89.7 79 60.8
Lj1g0005313 Lotus japonicus HOM05D002509 ORTHO05D002758 1.3e-16 89.7 79 62.0
Lalb_Chr09g0320211 Lupinus albus HOM05D002509 ORTHO05D002758 1.7e-16 89.4 80 61.2
SGA_v2.0_scaffold273G46397 Striga asiatica HOM05D002509 ORTHO05D002758 1.7e-16 89.4 78 57.7
PGR004G1629 Punica granatum HOM05D002509 ORTHO05D002758 3.7e-16 88.2 83 56.6
Ca_25109_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 6.3e-16 87.4 78 57.7
ECA233G1525 Erigeron canadensis HOM05D002509 ORTHO05D002758 1.4e-15 86.3 79 58.2
Lsat_1_v5_gn_1_52320 Lactuca sativa HOM05D002509 ORTHO05D002758 1.4e-15 86.3 80 55.0
PGR142G2449 Punica granatum HOM05D002509 ORTHO05D002758 1.8e-15 85.9 81 55.6
Zm00001eb004190 Zea mays HOM05D002509 ORTHO05D002758 3.1e-15 85.1 80 55.0
HPP92_005094 Vanilla planifolia HOM05D002509 ORTHO05D002758 4.1e-15 84.7 79 53.2
PSO063G1007 Papaver somniferum HOM05D002509 ORTHO05D002758 5.4e-15 84.3 79 53.2
Phvul.002G039800 Phaseolus vulgaris HOM05D002509 ORTHO05D002758 7.0e-15 84.0 79 57.0
DCAR_020815 Daucus carota HOM05D002509 ORTHO05D002758 7.7e-14 80.5 74 60.8
Migut.K00137 Erythranthe guttata HOM05D002509 ORTHO05D002758 7.7e-14 80.5 79 55.7
Zm00001eb403140 Zea mays HOM05D002509 ORTHO05D002758 2.3e-13 79.0 80 55.0
DCAR_017679 Daucus carota HOM05D002509 ORTHO05D002758 3.8e-13 78.2 79 57.0
HanXRQChr02g0051671 Helianthus annuus HOM05D002509 ORTHO05D002758 3.8e-13 78.2 80 56.2
PSO801G0281 Papaver somniferum HOM05D002509 ORTHO05D002758 6.5e-13 77.4 85 51.8
SalBow6G5888 Salvia bowleyana HOM05D002509 ORTHO05D002758 6.5e-13 77.4 79 51.9
ATR0219G016 Amborella trichopoda HOM05D002509 ORTHO05D002758 1.1e-12 76.6 83 53.0
Nn2g11606 Nelumbo nucifera HOM05D002509 ORTHO05D002758 1.5e-12 76.3 64 64.1
PSO339G4012 Papaver somniferum HOM05D002509 ORTHO05D002758 2.5e-12 75.5 85 50.6
FvH4_7g33950 Fragaria vesca HOM05D002509 ORTHO05D002758 5.5e-12 74.3 54 72.2
Hund02786 Selenicereus undatus HOM05D002509 ORTHO05D002758 5.5e-12 74.3 107 43.9
THA.LOC104826915 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 5.5e-12 74.3 98 46.9
Actinidia20629 Actinidia chinensis HOM05D002509 ORTHO05D002758 9.5e-12 73.6 60 60.0
THA.LOC104816350 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 9.5e-12 73.6 85 55.3
PSO339G6281 Papaver somniferum HOM05D002509 ORTHO05D002758 1.2e-11 73.2 78 50.0
MBI18_g36549_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 1.6e-11 72.8 68 52.9
CANSAT56G3595 Cannabis sativa HOM05D002509 ORTHO05D002758 2.8e-11 72.0 77 54.5
HanXRQChr13g0401001 Helianthus annuus HOM05D002509 ORTHO05D002758 2.8e-11 72.0 79 50.6
Ah.11g051170 Amaranthus hybridus HOM05D002509 ORTHO05D002758 3.6e-11 71.6 119 37.8
Sc04g0001520 Simmondsia chinensis HOM05D002509 ORTHO05D002758 6.1e-11 70.9 79 50.6
AUR62008146 Chenopodium quinoa HOM05D002509 ORTHO05D002758 8.0e-11 70.5 120 36.7
Glyma.01G228100 Glycine max HOM05D002509 ORTHO05D002758 1.0e-10 70.1 79 50.6
Lsat_1_v5_gn_6_24981 Lactuca sativa HOM05D002509 ORTHO05D002758 1.8e-10 69.3 75 54.7
BcaB01g05840 Brassica carinata HOM05D002509 ORTHO05D002758 2.3e-10 68.9 107 43.9
BolC3t12704H Brassica oleracea HOM05D002509 ORTHO05D002758 2.3e-10 68.9 107 43.9
Aa31LG1G21740 Aethionema arabicum HOM05D002509 ORTHO05D002758 3.0e-10 68.6 98 42.9
EL10Ac5g10657 Beta vulgaris HOM05D002509 ORTHO05D002758 3.0e-10 68.6 120 36.7
AUR62028728 Chenopodium quinoa HOM05D002509 ORTHO05D002758 8.8e-10 67.0 120 36.7
Os10g0440100 Oryza sativa ssp. japonica HOM05D002509 ORTHO05D002758 1.2e-09 66.6 81 46.9
Sp6g39330 Schrenkiella parvula HOM05D002509 ORTHO05D002758 1.5e-09 66.2 115 42.6
CARHR209930 Cardamine hirsuta HOM05D002509 ORTHO05D002758 2.0e-09 65.9 111 40.5
CDE10G0268 Ceratophyllum demersum HOM05D002509 ORTHO05D002758 5.7e-09 64.3 80 43.8
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 5.7e-09 64.3 54 59.3
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 5.7e-09 64.3 79 49.4
A03p01160 Brassica napus HOM05D002509 ORTHO05D002758 1.3e-08 63.2 107 41.1
CDE10G0407 Ceratophyllum demersum HOM05D002509 ORTHO05D002758 1.3e-08 63.2 80 42.5
BraA03t09498Z Brassica rapa HOM05D002509 ORTHO05D002758 1.7e-08 62.8 106 41.5
SGA_v2.0_scaffold94G28542 Striga asiatica HOM05D002509 ORTHO05D002758 3.7e-08 61.6 78 52.6
ECA248G1100 Erigeron canadensis HOM05D002509 ORTHO05D002758 4.9e-08 61.2 80 45.0
C03p01500 Brassica napus HOM05D002509 ORTHO05D002758 8.3e-08 60.5 88 45.5
SEGI_10652 Sequoiadendron giganteum HOM05D002509 ORTHO05D002758 8.3e-08 60.5 95 38.9
BcaB01g05822 Brassica carinata HOM05D002509 ORTHO05D002758 1.4e-07 59.7 112 41.1
AL6G12740 Arabidopsis lyrata HOM05D002509 ORTHO05D002758 5.4e-07 57.8 111 37.8
Ah.02g110850 Amaranthus hybridus HOM05D002509 ORTHO05D002758 9.2e-07 57.0 121 36.4
BcaC06g32057 Brassica carinata HOM05D002509 ORTHO05D002758 9.2e-07 57.0 98 40.8
SEGI_09093 Sequoiadendron giganteum HOM05D002509 ORTHO05D002758 1.2e-06 56.6 95 37.9
AT5G03415 Arabidopsis thaliana HOM05D002509 ORTHO05D002758 2.0e-06 55.8 111 37.8
Pp3c3_11980 Physcomitrium patens HOM05D002509 ORTHO05D002758 2.0e-06 55.8 99 38.4
SGA_v2.0_scaffold69G23151 Striga asiatica HOM05D002509 ORTHO05D002758 2.0e-06 55.8 61 50.8
Glyma.11G010800 Glycine max HOM05D002509 ORTHO05D002758 3.5e-06 55.1 79 41.8
Pp3c13_21530 Physcomitrium patens HOM05D002509 ORTHO05D002758 4.5e-06 54.7 94 39.4


User provided reference genes

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