Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.9e-52 208.8 97 100.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.9e-52 208.8 97 100.0
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-42 176.4 96 81.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.1e-42 174.9 96 80.2
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 6.9e-42 173.7 95 82.1
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.4e-41 171.0 96 77.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.4e-41 171.0 96 77.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.4e-41 171.0 96 77.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.7e-40 169.1 96 77.1
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.7e-40 169.1 95 78.9
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.8e-40 167.9 96 76.0
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 4.9e-40 167.5 95 74.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 6.4e-40 167.2 96 75.0
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.4e-39 166.0 95 78.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.9e-39 165.6 95 78.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.4e-39 165.2 96 76.0
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.4e-39 165.2 96 77.1
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.4e-39 165.2 95 75.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 3.2e-39 164.9 95 76.8
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.2e-39 164.5 95 74.7
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 9.3e-39 163.3 95 72.6
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 9.3e-39 163.3 96 72.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.2e-38 162.9 96 75.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.1e-38 162.2 95 75.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.1e-38 162.2 94 75.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.7e-38 161.8 97 70.1
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 3.5e-38 161.4 97 70.1
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 6.0e-38 160.6 96 72.9
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 6.0e-38 160.6 96 72.9
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 7.8e-38 160.2 93 75.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.0e-37 159.8 96 70.8
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.0e-37 159.8 97 74.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.3e-37 159.5 95 76.8
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-37 159.5 95 76.8
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-37 159.5 95 76.8
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.7e-37 159.1 95 75.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.7e-37 159.1 95 75.8
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.7e-37 159.1 95 74.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.0e-37 158.3 95 74.7
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 8.7e-37 156.8 96 69.8
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.1e-36 156.4 95 70.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.5e-36 156.0 94 73.4
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.5e-36 156.0 96 71.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.9e-36 155.6 94 72.3
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.3e-36 154.5 93 74.2
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 7.3e-36 153.7 94 73.4
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 7.3e-36 153.7 96 69.8
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 7.3e-36 153.7 94 75.5
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 7.3e-36 153.7 95 74.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 9.6e-36 153.3 94 74.5
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-35 152.5 94 73.4
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.6e-35 152.5 96 70.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.8e-35 151.0 95 70.5
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.1e-34 149.8 96 70.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.4e-34 149.4 95 68.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.4e-34 149.4 95 69.5
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.8e-34 149.1 92 77.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.4e-34 148.7 94 69.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.1e-34 148.3 95 70.5
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.1e-34 148.3 96 70.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.0e-34 147.9 95 72.6
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 6.9e-34 147.1 94 68.1
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 9.0e-34 146.7 95 69.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 9.0e-34 146.7 95 67.4
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-33 146.4 95 69.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-33 146.4 95 68.4
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.2e-33 146.4 94 68.1
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.2e-33 146.4 95 70.5
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.5e-33 146.0 94 69.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 2.0e-33 145.6 95 70.5
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.0e-33 145.6 95 70.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.6e-33 145.2 95 68.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 3.4e-33 144.8 94 70.2
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 3.4e-33 144.8 96 67.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.5e-33 144.4 97 64.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 4.5e-33 144.4 89 71.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.8e-33 144.1 94 68.1
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 7.6e-33 143.7 95 69.5
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 7.6e-33 143.7 93 66.7
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 7.6e-33 143.7 95 68.4
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 9.9e-33 143.3 95 69.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 3.8e-32 141.4 91 69.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 4.9e-32 141.0 95 66.3
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.4e-32 140.6 96 61.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 6.4e-32 140.6 94 69.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.1e-31 139.8 96 66.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.1e-31 139.8 94 64.9
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.4e-31 138.7 95 65.3
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.4e-31 138.7 96 63.5
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.2e-31 138.3 95 66.3
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 5.4e-31 137.5 97 62.9
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 5.4e-31 137.5 94 69.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.4e-31 137.5 97 63.9
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 7.1e-31 137.1 94 68.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 7.1e-31 137.1 96 64.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 9.3e-31 136.7 96 66.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-30 136.3 94 67.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.5e-30 134.8 94 66.0
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.0e-30 134.0 91 65.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 6.0e-30 134.0 97 62.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.8e-29 132.5 96 63.5
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-29 132.5 96 63.5
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.3e-29 132.1 96 60.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 3.9e-29 131.3 96 62.5
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.9e-29 131.3 97 60.8
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 3.9e-29 131.3 97 60.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 3.9e-29 131.3 97 60.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 5.1e-29 131.0 97 60.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 6.7e-29 130.6 96 62.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.3e-28 128.3 96 58.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.3e-28 128.3 96 61.5
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.6e-27 125.9 95 60.0
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.4e-26 122.9 97 60.8
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.2e-25 119.8 91 64.8
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.6e-25 117.1 92 62.0
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.9e-24 115.2 92 57.6
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.8e-24 114.8 93 57.0
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.8e-24 114.8 93 58.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.4e-23 112.1 91 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.3e-21 106.3 91 49.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 5.1e-21 104.4 92 54.3
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-19 99.8 93 46.2
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.1e-18 96.7 92 47.8
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.1e-18 96.7 92 47.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.4e-18 96.3 91 48.4
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.5e-17 91.3 88 45.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.5e-15 84.3 85 44.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.7e-11 71.6 50 62.0
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.9e-07 59.3 78 37.2
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 2.5e-07 58.9 78 35.9
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 2.5e-07 58.9 78 37.2
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 4.2e-07 58.2 78 35.9
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 7.2e-07 57.4 78 37.2
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 7.2e-07 57.4 56 46.4
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 9.3e-07 57.0 78 37.2
AL1G42050 Arabidopsis lyrata HOM05D001439 ORTHO05D002726 1.2e-06 56.6 68 44.1
AT1G28420 Arabidopsis thaliana HOM05D001439 ORTHO05D002726 1.2e-06 56.6 68 44.1
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 1.2e-06 56.6 56 46.4
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 1.6e-06 56.2 80 35.0
A09p37620 Brassica napus HOM05D001439 ORTHO05D002726 1.6e-06 56.2 56 48.2
BraA09t39272Z Brassica rapa HOM05D001439 ORTHO05D002726 1.6e-06 56.2 56 48.2
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 1.6e-06 56.2 56 46.4
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 1.6e-06 56.2 78 33.3
THA.LOC104812616 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.6e-06 56.2 78 38.5
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 2.1e-06 55.8 78 35.9
BcaC05g26861 Brassica carinata HOM05D001439 ORTHO05D002726 2.1e-06 55.8 56 48.2
C05p27430 Brassica napus HOM05D001439 ORTHO05D002726 2.1e-06 55.8 56 48.2
BolC5t31459H Brassica oleracea HOM05D001439 ORTHO05D002726 2.1e-06 55.8 56 48.2
Carub.0001s2690 Capsella rubella HOM05D001439 ORTHO05D002726 2.1e-06 55.8 68 42.6
Haze_13244 Corylus avellana HOM05D001439 ORTHO05D002726 2.1e-06 55.8 78 37.2
Thhalv10006543m.g Eutrema salsugineum HOM05D001439 ORTHO05D002726 2.7e-06 55.5 56 48.2
Potri.007G135500 Populus trichocarpa HOM05D001439 ORTHO05D002726 2.7e-06 55.5 78 35.9
BcaB03g12103 Brassica carinata HOM05D001439 ORTHO05D002726 3.6e-06 55.1 56 48.2
A08p25510 Brassica napus HOM05D001439 ORTHO05D002726 3.6e-06 55.1 56 48.2
BraA08t34505Z Brassica rapa HOM05D001439 ORTHO05D002726 3.6e-06 55.1 56 48.2
CARHR027930 Cardamine hirsuta HOM05D001439 ORTHO05D002726 3.6e-06 55.1 58 46.6
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 3.6e-06 55.1 56 44.6
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 3.6e-06 55.1 58 43.1
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 4.6e-06 54.7 56 44.6
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 4.6e-06 54.7 58 43.1
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 4.6e-06 54.7 56 44.6
SEGI_30380 Sequoiadendron giganteum HOM05D001439 ORTHO05D002726 4.6e-06 54.7 95 35.8
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 6.1e-06 54.3 56 42.9
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 6.1e-06 54.3 56 42.9
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 6.1e-06 54.3 56 44.6
Psat7g116080 Pisum sativum HOM05D001439 ORTHO05D002726 6.1e-06 54.3 56 44.6
EL10Ac9g20819 Beta vulgaris HOM05D001439 ORTHO05D002726 7.9e-06 53.9 83 33.7
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 7.9e-06 53.9 56 39.3
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 7.9e-06 53.9 82 43.9
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 7.9e-06 53.9 83 32.5
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 7.9e-06 53.9 83 32.5


User provided reference genes

Program Settings