Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.1e-44 183.0 92 100.0
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.6e-24 115.9 91 60.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 2.7e-24 115.2 89 62.9
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.4e-23 112.8 90 58.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 6.8e-23 110.5 91 59.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.2e-22 109.8 90 62.2
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.5e-22 109.4 89 58.4
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.6e-22 108.6 90 61.1
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.6e-22 108.6 90 58.9
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.4e-22 108.2 89 59.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 5.7e-22 107.5 88 60.2
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.3e-21 106.3 95 56.8
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.2e-21 105.5 90 60.0
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 2.2e-21 105.5 89 59.6
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.7e-21 104.8 90 58.9
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 3.7e-21 104.8 90 58.9
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.8e-21 104.4 90 56.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 6.3e-21 104.0 88 58.0
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 6.3e-21 104.0 90 56.7
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 8.3e-21 103.6 88 59.1
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.1e-20 103.2 90 56.7
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 3.1e-20 101.7 89 57.3
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 3.1e-20 101.7 89 57.3
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 4.1e-20 101.3 88 56.8
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 4.1e-20 101.3 89 56.2
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 5.4e-20 100.9 88 58.0
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 5.4e-20 100.9 89 58.4
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 5.4e-20 100.9 91 57.1
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 5.4e-20 100.9 88 58.0
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 7.0e-20 100.5 87 57.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 9.1e-20 100.1 88 55.7
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-19 99.8 90 58.9
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.6e-19 99.4 91 58.2
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.6e-19 99.4 95 53.7
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.6e-19 99.4 90 56.7
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.0e-19 99.0 91 57.1
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 2.0e-19 99.0 88 56.8
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.0e-19 99.0 90 56.7
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.0e-19 99.0 90 56.7
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 4.5e-19 97.8 91 58.2
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 4.5e-19 97.8 88 59.1
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 4.5e-19 97.8 80 58.8
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 5.9e-19 97.4 92 55.4
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.7e-19 97.1 90 54.4
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.7e-19 97.1 90 54.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 7.7e-19 97.1 90 54.4
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.0e-18 96.7 97 52.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.0e-18 96.7 97 52.6
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.0e-18 96.7 90 57.8
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.0e-18 96.7 88 55.7
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-18 96.7 88 56.8
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.7e-18 95.9 88 54.5
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 2.2e-18 95.5 88 58.0
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.2e-18 95.5 90 57.8
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.2e-18 95.5 97 51.5
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.2e-18 95.5 97 51.5
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.2e-18 95.5 90 54.4
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.2e-18 95.5 91 54.9
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.9e-18 95.1 87 57.5
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.8e-18 94.7 89 58.4
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.0e-18 94.4 90 53.3
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 6.5e-18 94.0 96 51.0
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.5e-18 94.0 90 53.3
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.5e-18 94.0 90 53.3
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 6.5e-18 94.0 88 53.4
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 6.5e-18 94.0 90 52.2
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 6.5e-18 94.0 89 49.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 8.5e-18 93.6 96 50.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.5e-17 92.8 86 54.7
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-17 92.8 90 53.3
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.5e-17 92.8 89 53.9
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.9e-17 92.4 81 61.7
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.9e-17 92.4 89 52.8
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.5e-17 92.0 88 53.4
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.5e-17 92.0 88 53.4
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.5e-17 92.0 89 56.2
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.2e-17 91.7 72 63.9
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.2e-17 91.7 88 53.4
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-17 91.7 75 62.7
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.5e-17 90.9 90 52.2
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 5.5e-17 90.9 86 54.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-16 89.7 80 57.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-16 89.7 86 53.5
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-16 89.7 76 60.5
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.2e-16 89.7 89 50.6
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.1e-16 89.0 90 51.1
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 2.8e-16 88.6 87 52.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.6e-16 88.2 90 51.1
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 6.1e-16 87.4 83 54.2
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 6.1e-16 87.4 90 51.1
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 6.1e-16 87.4 89 51.7
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 8.0e-16 87.0 97 48.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 8.0e-16 87.0 98 49.0
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-15 86.7 90 51.1
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.4e-15 86.3 87 51.7
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.3e-15 85.5 88 52.3
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.3e-15 85.5 90 48.9
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.0e-15 85.1 85 54.1
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 4.0e-15 84.7 74 63.5
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 4.0e-15 84.7 88 52.3
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 8.8e-15 83.6 98 48.0
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 8.8e-15 83.6 90 47.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.5e-14 82.8 89 49.4
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 2.6e-14 82.0 80 52.5
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 7.5e-14 80.5 86 48.8
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 9.8e-14 80.1 90 47.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 9.8e-14 80.1 90 47.8
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 9.8e-14 80.1 90 47.8
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.3e-13 79.7 76 53.9
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.3e-13 79.7 76 53.9
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 8.3e-13 77.0 77 51.9
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.1e-12 76.6 90 47.8
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.4e-12 76.3 76 52.6
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 7.0e-12 73.9 90 45.6
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 7.0e-12 73.9 88 46.6
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 5.9e-11 70.9 95 44.2
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 9.5e-09 63.5 90 40.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.8e-08 62.0 86 40.7
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 8.0e-08 60.5 65 50.8
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 5.2e-07 57.8 43 65.1
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.4e-06 55.1 84 41.7
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 4.4e-06 54.7 65 44.6


User provided reference genes

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