Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 6.9e-116 420.6 208 100.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 7.7e-67 257.7 200 65.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.7e-62 241.5 202 62.4
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.3e-61 238.0 200 61.5
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-60 237.3 202 61.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.1e-60 235.3 193 63.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.0e-60 234.6 202 61.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 9.2e-60 234.2 202 60.9
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.7e-59 232.6 200 58.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.0e-58 230.7 196 61.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.3e-58 230.3 202 60.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.9e-58 229.2 200 59.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.0e-58 228.4 202 59.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.6e-56 222.2 198 57.1
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.6e-56 222.2 198 57.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 8.0e-56 221.1 200 60.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.0e-55 220.7 198 57.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.0e-55 220.7 200 57.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.4e-55 220.3 202 58.4
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 5.8e-54 214.9 197 55.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.2e-53 213.0 198 58.1
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.4e-53 211.5 202 56.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.4e-52 208.4 202 56.9
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.0e-51 206.5 183 57.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 7.8e-51 204.5 187 57.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.7e-50 203.4 197 55.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-50 202.6 197 53.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 3.9e-50 202.2 200 52.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 5.0e-50 201.8 199 54.3
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.3e-49 198.7 189 57.7
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 4.3e-49 198.7 200 54.5
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.3e-49 198.0 203 52.7
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.1e-48 196.4 207 55.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 6.2e-48 194.9 197 54.3
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.5e-46 190.3 203 54.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.0e-46 189.9 194 54.6
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.6e-46 189.5 221 48.9
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.6e-46 189.5 205 51.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.4e-46 188.7 188 51.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.5e-46 188.0 203 52.7
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 7.5e-46 188.0 198 53.5
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 7.5e-46 188.0 191 53.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.9e-45 186.0 196 53.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.9e-45 186.0 193 52.8
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.9e-45 186.0 204 49.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.7e-45 185.7 206 50.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 4.9e-45 185.3 184 53.3
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 8.3e-45 184.5 196 49.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.9e-44 183.3 196 52.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.4e-44 183.0 206 49.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-44 183.0 202 50.5
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.2e-44 182.6 198 51.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 4.1e-44 182.2 194 52.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 4.1e-44 182.2 193 51.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.4e-44 181.8 197 51.3
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.6e-43 180.3 210 49.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-43 179.9 191 51.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.7e-43 179.5 198 49.5
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.6e-43 178.7 196 51.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-43 178.7 201 51.2
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.6e-43 178.7 202 48.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.0e-43 178.3 197 52.8
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 6.0e-43 178.3 189 52.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 7.8e-43 177.9 200 50.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.8e-43 177.9 192 52.1
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.0e-42 177.6 202 49.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.3e-42 177.2 202 49.0
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-42 176.8 197 52.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 5.1e-42 175.3 194 50.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 6.6e-42 174.9 200 49.0
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 6.6e-42 174.9 185 52.4
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.6e-42 174.5 191 53.4
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-41 174.1 197 51.8
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-41 174.1 197 51.8
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.5e-41 173.7 196 51.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-41 173.3 196 52.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.9e-41 173.3 188 51.6
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 4.3e-41 172.2 196 51.5
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.3e-41 172.2 193 48.7
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.3e-41 172.2 202 46.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 5.6e-41 171.8 196 51.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 5.6e-41 171.8 202 49.5
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 7.3e-41 171.4 194 51.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 9.5e-41 171.0 196 51.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.2e-40 170.6 197 51.3
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.2e-40 170.6 192 51.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.8e-40 169.5 223 46.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.8e-40 169.5 187 48.7
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 6.2e-40 168.3 199 47.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 8.1e-40 167.9 197 52.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.4e-39 167.2 197 49.2
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.4e-39 167.2 199 48.2
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.8e-39 166.8 200 48.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.3e-39 166.4 200 49.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.0e-39 165.6 189 49.2
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 4.0e-39 165.6 192 51.0
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.8e-39 164.9 144 56.9
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 6.8e-39 164.9 202 46.5
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.2e-38 164.1 199 48.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.5e-38 163.7 193 49.7
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 6.4e-37 158.3 195 49.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 8.3e-37 157.9 198 46.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-36 157.1 189 47.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.1e-36 155.6 193 47.7
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 5.4e-36 155.2 209 42.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.6e-35 153.7 183 49.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.1e-35 153.3 203 46.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.7e-35 152.9 198 46.5
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.8e-35 151.4 122 61.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.3e-34 150.6 228 39.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-34 149.8 186 46.8
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.1e-32 143.3 148 54.7
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 4.9e-29 132.1 136 53.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.4e-28 129.8 179 42.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.2e-28 129.4 201 39.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.2e-28 129.4 172 45.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.4e-28 128.6 188 42.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-27 127.5 208 39.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.0e-27 125.2 141 51.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.3e-26 123.2 184 45.1
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.3e-26 123.2 162 46.9
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.9e-26 122.5 188 41.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.9e-25 120.2 190 43.2
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.8e-24 116.3 141 46.8
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-23 114.4 140 48.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.6e-22 109.8 125 45.6
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.4e-21 105.1 85 58.8
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 7.1e-20 101.7 95 55.8
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-19 100.5 141 46.1
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 6.0e-19 98.6 137 43.8
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 6.6e-18 95.1 142 41.5
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 5.8e-14 82.0 76 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.3e-13 80.9 139 40.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-13 80.5 142 36.6
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-12 77.0 58 67.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.1e-12 75.1 58 65.5
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.3e-12 74.7 58 67.2
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.3e-12 74.7 58 67.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-11 73.6 58 63.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.5e-11 72.8 66 57.6
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-11 72.4 58 63.8
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.0e-10 71.2 116 38.8
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.1e-10 68.9 64 56.2
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 2.5e-09 66.6 181 34.8
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-07 61.2 36 77.8
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 1.8e-07 60.5 52 55.8


User provided reference genes

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