Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39665 Carica papaya HOM05D003172 ORTHO05D003708 2.4e-47 191.8 96 100.0
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 7.2e-44 180.3 96 93.8
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 9.5e-44 179.9 96 93.8
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 9.5e-44 179.9 96 93.8
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 9.5e-44 179.9 96 93.8
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 9.5e-44 179.9 96 92.7
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 9.5e-44 179.9 96 92.7
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 92.7
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 92.7
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 92.7
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 92.7
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 93.8
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 93.8
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 93.8
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 93.8
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 1.2e-43 179.5 96 90.6
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 2.1e-43 178.7 96 91.7
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.1e-43 178.7 96 91.7
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 2.1e-43 178.7 96 92.7
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 2.1e-43 178.7 96 90.6
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 91.7
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.8e-43 178.3 96 92.7
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 92.7
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 92.7
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 92.7
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 91.7
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 91.7
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 3.6e-43 177.9 96 91.7
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 4.7e-43 177.6 96 92.7
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 4.7e-43 177.6 96 92.7
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 92.7
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 91.7
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 92.7
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 92.7
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 91.7
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 6.1e-43 177.2 96 89.6
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 8.0e-43 176.8 96 91.7
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 8.0e-43 176.8 96 90.6
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 1.0e-42 176.4 96 89.6
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 1.0e-42 176.4 96 92.7
CDE04G1193 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.4e-42 176.0 96 91.7
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 1.4e-42 176.0 96 89.6
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 1.4e-42 176.0 96 91.7
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.8e-42 175.6 96 90.6
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 1.8e-42 175.6 96 91.7
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 1.8e-42 175.6 96 87.5
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 1.8e-42 175.6 96 90.6
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 90.6
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 90.6
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 90.6
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 2.3e-42 175.3 96 91.7
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 3.0e-42 174.9 96 88.5
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 3.0e-42 174.9 96 90.6
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 3.0e-42 174.9 96 89.6
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 3.0e-42 174.9 96 89.6
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 4.0e-42 174.5 96 91.7
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 4.0e-42 174.5 96 88.5
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 5.2e-42 174.1 96 89.6
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 5.2e-42 174.1 96 89.6
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 5.2e-42 174.1 96 90.6
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 5.2e-42 174.1 96 90.6
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BcaNung04945 Brassica carinata HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 6.8e-42 173.7 96 90.6
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 8.9e-42 173.3 96 88.5
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 8.9e-42 173.3 96 88.5
Nitab4.5_0000001g0360 Nicotiana tabacum HOM05D003172 ORTHO05D003708 8.9e-42 173.3 96 88.5
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 1.2e-41 172.9 96 89.6
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 1.2e-41 172.9 96 89.6
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 1.2e-41 172.9 96 87.5
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 1.2e-41 172.9 96 89.6
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 1.2e-41 172.9 96 89.6
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 1.5e-41 172.6 96 89.6
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 1.5e-41 172.6 96 90.6
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 1.5e-41 172.6 96 87.5
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 89.6
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 89.6
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 87.5
THA.LOC104801500 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 87.5
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 88.5
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 87.5
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.0e-41 172.2 96 87.5
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 2.6e-41 171.8 96 88.5
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 2.6e-41 171.8 96 89.6
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 2.6e-41 171.8 96 87.5
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.6e-41 171.8 96 86.5
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 3.4e-41 171.4 96 88.5
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 3.4e-41 171.4 96 88.5
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 3.4e-41 171.4 96 88.5
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 4.4e-41 171.0 96 88.5
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 4.4e-41 171.0 96 89.6
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 5.7e-41 170.6 96 88.5
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 5.7e-41 170.6 96 87.5
CARHR217100 Cardamine hirsuta HOM05D003172 ORTHO05D003708 7.5e-41 170.2 96 87.5
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 7.5e-41 170.2 96 87.5
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 9.8e-41 169.9 96 87.5
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 1.3e-40 169.5 96 88.5
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 1.7e-40 169.1 96 87.5
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 2.2e-40 168.7 96 86.5
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 2.8e-40 168.3 96 86.5
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 3.7e-40 167.9 96 86.5
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 4.9e-40 167.5 96 85.4
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 4.9e-40 167.5 96 83.3
SHI23375 Sapria himalayana HOM05D003172 ORTHO05D003708 8.3e-40 166.8 96 85.4
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.4e-39 166.0 96 85.4
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 1.8e-39 165.6 96 85.4
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 1.8e-39 165.6 96 85.4
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 1.8e-39 165.6 96 85.4
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 3.2e-39 164.9 96 85.4
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 7.0e-39 163.7 96 83.3
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 7.0e-39 163.7 96 83.3
SEGI_39352 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 7.0e-39 163.7 96 84.4
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 9.2e-39 163.3 96 84.4
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 9.2e-39 163.3 113 77.0
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 2.0e-38 162.2 96 82.3
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 5.9e-38 160.6 122 71.3
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 5.9e-38 160.6 118 72.0
Cpa.g.c39914 Carica papaya HOM05D003172 ORTHO05D003708 7.8e-38 160.2 83 96.4
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 1.0e-37 159.8 96 80.2
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 8.6e-37 156.8 96 80.2
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 5.6e-36 154.1 96 83.3
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 9.5e-36 153.3 96 79.2
Lsat_1_v5_gn_8_47041 Lactuca sativa HOM05D003172 ORTHO05D003708 9.5e-36 153.3 96 81.2
CBR_g17178 Chara braunii HOM05D003172 ORTHO05D003708 8.0e-35 150.2 96 75.0
HPP92_012145 Vanilla planifolia HOM05D003172 ORTHO05D003708 1.4e-34 149.4 96 75.0
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 1.8e-34 149.1 96 75.0
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 4.4e-33 144.4 99 76.8
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 5.8e-33 144.1 96 72.9
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 8.3e-32 140.2 96 76.0
Lsat_1_v5_gn_8_48920 Lactuca sativa HOM05D003172 ORTHO05D003708 1.3e-29 132.9 93 72.0
BcaC03g13584 Brassica carinata HOM05D003172 ORTHO05D003708 3.6e-27 124.8 94 71.3
MCO08G071 Micromonas commoda HOM05D003172 ORTHO05D003708 2.9e-24 115.2 101 55.4
AL6G29450 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 1.3e-21 106.3 58 87.9
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 5.1e-21 104.4 96 61.5
Cre04.g227350 Chlamydomonas reinhardtii HOM05D003172 ORTHO05D003708 3.7e-16 88.2 94 42.6
BraA02t05438Z Brassica rapa HOM05D003172 ORTHO05D003708 1.4e-15 86.3 48 85.4
A02p04800 Brassica napus HOM05D003172 ORTHO05D003708 2.4e-15 85.5 50 84.0
Cfa022625 Carpinus fangiana HOM05D003172 ORTHO05D003708 2.7e-14 82.0 101 45.5
Lsat_1_v5_gn_8_137421 Lactuca sativa HOM05D000658 ORTHO05D000826 7.8e-14 80.5 47 83.0


User provided reference genes

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