Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39208 Carica papaya HOM05D004573 ORTHO05D005764 1.1e-190 669.8 340 100.0
Haze_17077 Corylus avellana HOM05D004573 ORTHO05D005764 2.3e-100 369.8 329 60.8
Thecc.10G040400 Theobroma cacao HOM05D004573 ORTHO05D005764 2.8e-98 362.8 334 61.4
QL08p059630 Quercus lobata HOM05D004573 ORTHO05D005764 4.8e-98 362.1 328 60.4
CiPaw.01G288400 Carya illinoinensis HOM05D004573 ORTHO05D005764 6.2e-98 361.7 329 59.0
Cfa001465 Carpinus fangiana HOM05D004573 ORTHO05D005764 1.5e-96 357.1 329 59.6
Dinv26026 Davidia involucrata HOM05D004573 ORTHO05D005764 5.4e-94 348.6 346 56.4
GSVIVG01016531001 Vitis vinifera HOM05D004573 ORTHO05D005764 8.7e-92 341.3 338 57.7
Duzib114G0300 Durio zibethinus HOM05D004573 ORTHO05D005764 7.4e-91 338.2 336 57.7
Gohir.D05G301500 Gossypium hirsutum HOM05D004573 ORTHO05D005764 9.6e-91 337.8 334 57.2
Gorai.009G319600 Gossypium raimondii HOM05D004573 ORTHO05D005764 9.6e-91 337.8 334 57.5
Gohir.A05G301800 Gossypium hirsutum HOM05D004573 ORTHO05D005764 3.1e-89 332.8 334 56.9
Manes.04G070300 Manihot esculenta HOM05D004573 ORTHO05D005764 4.0e-89 332.4 327 58.4
TAR623G0262 Trochodendron aralioides HOM05D004573 ORTHO05D005764 4.0e-89 332.4 351 54.7
Ciclev10030556m.g Citrus clementina HOM05D004573 ORTHO05D005764 2.0e-88 330.1 328 57.9
COL.COLO4_15058 Corchorus olitorius HOM05D004573 ORTHO05D005764 1.0e-87 327.8 337 56.4
Prupe.2G236800 Prunus persica HOM05D004573 ORTHO05D005764 2.2e-87 326.6 333 55.0
PGR044G2694 Punica granatum HOM05D004573 ORTHO05D005764 2.5e-86 323.2 333 53.8
CSS0014274 Camellia sinensis var. sinensis HOM05D004573 ORTHO05D005764 3.5e-85 319.3 343 56.0
Lalb_Chr04g0251191 Lupinus albus HOM05D004573 ORTHO05D005764 3.9e-84 315.8 336 54.2
Actinidia13882 Actinidia chinensis HOM05D004573 ORTHO05D005764 5.1e-84 315.5 343 54.5
Potri.010G202800 Populus trichocarpa HOM05D004573 ORTHO05D005764 5.1e-84 315.5 334 55.7
Sabra10G0156500 Salix brachista HOM05D004573 ORTHO05D005764 1.5e-83 313.9 334 55.1
Glyma.14G068200 Glycine max HOM05D004573 ORTHO05D005764 2.8e-82 309.7 336 53.9
Eucgr.J00002 Eucalyptus grandis HOM05D004573 ORTHO05D005764 4.8e-82 308.9 338 50.9
Glyma.02G248300 Glycine max HOM05D004573 ORTHO05D005764 6.2e-82 308.5 336 52.4
TWI63G1141 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 6.9e-81 305.1 334 54.2
MD01G1135400 Malus domestica HOM05D004573 ORTHO05D005764 4.5e-80 302.4 335 53.4
Phvul.008G232400 Phaseolus vulgaris HOM05D004573 ORTHO05D005764 5.8e-80 302.0 337 52.2
CANSAT11G1219 Cannabis sativa HOM05D004573 ORTHO05D005764 1.1e-78 297.7 334 51.8
PSO339G0476 Papaver somniferum HOM05D004573 ORTHO05D005764 5.5e-78 295.4 340 50.6
PSO384G3826 Papaver somniferum HOM05D004573 ORTHO05D005764 5.5e-78 295.4 340 50.0
FAN06G2378 Fragaria x ananassa HOM05D004573 ORTHO05D005764 9.3e-78 294.7 335 51.6
RcHm_v2.0_Chr1g0367761 Rosa chinensis HOM05D004573 ORTHO05D005764 2.1e-77 293.5 334 51.2
arahy.Tifrunner.gnm1.ann1.T39EX2 Arachis hypogaea HOM05D004573 ORTHO05D005764 2.7e-77 293.1 343 51.6
THA.LOC104808042 Tarenaya hassleriana HOM05D004573 ORTHO05D005764 6.1e-77 292.0 337 53.1
arahy.Tifrunner.gnm1.ann1.3B46PQ Arachis hypogaea HOM05D004573 ORTHO05D005764 7.9e-77 291.6 343 51.3
Psat2g041280 Pisum sativum HOM05D004573 ORTHO05D005764 1.0e-76 291.2 343 51.3
LjContig00141g0003376 Lotus japonicus HOM05D004573 ORTHO05D005764 1.3e-76 290.8 336 50.9
Sc10g0001660 Simmondsia chinensis HOM05D004573 ORTHO05D005764 1.3e-76 290.8 346 52.3
Medtr5g079920 Medicago truncatula HOM05D004573 ORTHO05D005764 2.3e-76 290.0 343 51.6
Ca_05890_v3 Cicer arietinum L. HOM05D004573 ORTHO05D005764 6.7e-76 288.5 343 51.9
PGSC0003DMG400029682 Solanum tuberosum HOM05D004573 ORTHO05D005764 8.7e-76 288.1 344 50.0
TWI38G0403 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 8.7e-76 288.1 338 52.4
Gohir.A05G349133 Gossypium hirsutum HOM05D004573 ORTHO05D005764 1.3e-74 284.3 323 52.3
vmacro10228 Vaccinium macrocarpon HOM05D004573 ORTHO05D005764 3.7e-74 282.7 341 54.5
ClCG07G003410 Citrullus lanatus HOM05D004573 ORTHO05D005764 8.2e-74 281.6 339 49.0
FAN10G1883 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.1e-73 281.2 334 49.7
Lj8C83T9 Lonicera japonica HOM05D004573 ORTHO05D005764 1.1e-73 281.2 332 51.5
MELO3C023865.2 Cucumis melo HOM05D004573 ORTHO05D005764 1.4e-73 280.8 340 50.3
Rhsim09G0166500 Rhododendron simsii HOM05D004573 ORTHO05D005764 1.4e-73 280.8 333 52.9
VMungo0647G0005 Vigna mungo HOM05D004573 ORTHO05D005764 1.4e-73 280.8 335 49.6
FAN03G1996 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.4e-73 280.0 334 49.7
FAN03G2998 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.4e-73 280.0 334 49.7
MD07G1200100 Malus domestica HOM05D004573 ORTHO05D005764 2.4e-73 280.0 332 50.9
Sp5g06990 Schrenkiella parvula HOM05D004573 ORTHO05D005764 2.4e-73 280.0 325 50.8
Oeu047310.1 Olea europaea HOM05D004573 ORTHO05D005764 3.1e-73 279.6 341 49.9
CsaV3_5G008150 Cucumis sativus L. HOM05D004573 ORTHO05D005764 9.0e-73 278.1 340 48.8
BcaC07g39867 Brassica carinata HOM05D004573 ORTHO05D005764 1.2e-72 277.7 338 50.3
BolC8t50690H Brassica oleracea HOM05D004573 ORTHO05D005764 1.2e-72 277.7 338 50.3
BcaB01g00096 Brassica carinata HOM05D004573 ORTHO05D005764 2.0e-72 276.9 338 50.3
C08p30730 Brassica napus HOM05D004573 ORTHO05D005764 3.4e-72 276.2 338 50.0
Sopen06g013510 Solanum pennellii HOM05D004573 ORTHO05D005764 4.5e-72 275.8 344 50.6
Solyc06g043030.4 Solanum lycopersicum HOM05D004573 ORTHO05D005764 7.7e-72 275.0 344 50.0
A09p48420 Brassica napus HOM05D004573 ORTHO05D005764 1.7e-71 273.9 338 49.7
BraA09t40294Z Brassica rapa HOM05D004573 ORTHO05D005764 1.7e-71 273.9 338 49.7
Nn2g11126 Nelumbo nucifera HOM05D004573 ORTHO05D005764 1.7e-71 273.9 342 48.2
CAN.G55.6 Capsicum annuum HOM05D004573 ORTHO05D005764 2.2e-71 273.5 344 49.1
Sed0007030 Sechium edule HOM05D004573 ORTHO05D005764 2.9e-71 273.1 341 49.3
Nitab4.5_0000005g0500 Nicotiana tabacum HOM05D004573 ORTHO05D005764 3.8e-71 272.7 340 49.1
AUR62012098 Chenopodium quinoa HOM05D004573 ORTHO05D005764 1.1e-70 271.2 345 49.6
Carub.0005s2220 Capsella rubella HOM05D004573 ORTHO05D005764 1.4e-70 270.8 336 48.8
Peaxi162Scf00658g00843 Petunia axillaris HOM05D004573 ORTHO05D005764 1.4e-70 270.8 344 49.4
Thhalv10010081m.g Eutrema salsugineum HOM05D004573 ORTHO05D005764 1.9e-70 270.4 336 49.7
CARHR165530 Cardamine hirsuta HOM05D004573 ORTHO05D005764 2.5e-70 270.0 325 51.1
Cc02_g07730 Coffea canephora HOM05D004573 ORTHO05D005764 5.5e-70 268.9 348 48.9
Aqoxy4G02884 Aquilegia oxysepala HOM05D004573 ORTHO05D005764 3.6e-69 266.2 342 46.2
FvH4_7g22680 Fragaria vesca HOM05D004573 ORTHO05D005764 1.8e-68 263.8 334 47.6
FAN01G2561 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.8e-68 263.8 334 47.6
TPR.G3490 Trifolium pratense HOM05D004573 ORTHO05D005764 1.8e-68 263.8 343 48.1
FAN01G0989 Fragaria x ananassa HOM05D004573 ORTHO05D005764 5.1e-68 262.3 334 47.3
MSTRG.284 Avicennia marina HOM05D004573 ORTHO05D005764 3.3e-67 259.6 346 48.0
FAN06G1159 Fragaria x ananassa HOM05D004573 ORTHO05D005764 5.7e-67 258.8 334 47.0
SGA_v2.0_scaffold2G00997 Striga asiatica HOM05D004573 ORTHO05D005764 7.4e-67 258.5 344 46.5
AUR62039368 Chenopodium quinoa HOM05D004573 ORTHO05D005764 2.2e-66 256.9 347 48.4
Migut.F01444 Erythranthe guttata HOM05D004573 ORTHO05D005764 4.8e-66 255.8 342 48.2
DCAR_027609 Daucus carota HOM05D004573 ORTHO05D005764 8.2e-66 255.0 343 46.4
Actinidia29230 Actinidia chinensis HOM05D004573 ORTHO05D005764 6.9e-65 251.9 306 51.6
ECA233G3287 Erigeron canadensis HOM05D004573 ORTHO05D005764 1.5e-64 250.8 331 49.2
HanXRQChr08g0220781 Helianthus annuus HOM05D004573 ORTHO05D005764 3.4e-64 249.6 333 46.8
AL5G36630 Arabidopsis lyrata HOM05D004573 ORTHO05D005764 1.0e-63 248.1 338 47.3
MBI14_g37190_MAGBIO Magnolia biondii HOM05D004573 ORTHO05D005764 3.8e-63 246.1 345 46.4
Nitab4.5_0000897g0020 Nicotiana tabacum HOM05D004573 ORTHO05D005764 5.0e-63 245.7 345 47.0
Lsat_1_v5_gn_8_15420 Lactuca sativa HOM05D004573 ORTHO05D005764 2.1e-61 240.4 326 45.4
Ah.16g102370 Amaranthus hybridus HOM05D004573 ORTHO05D005764 3.6e-61 239.6 344 46.2
Hund13770 Selenicereus undatus HOM05D004573 ORTHO05D005764 2.3e-60 236.9 337 46.6
AT3G55480 Arabidopsis thaliana HOM05D004573 ORTHO05D005764 8.8e-60 235.0 338 44.4
Gorai.012G070900 Gossypium raimondii HOM05D004573 ORTHO05D005764 3.3e-59 233.0 312 47.1
EL10Ac2g04737 Beta vulgaris HOM05D004573 ORTHO05D005764 1.3e-58 231.1 342 45.3
ATR0559G310 Amborella trichopoda HOM05D004573 ORTHO05D005764 2.9e-55 219.9 357 39.5
Aa31LG10G10520 Aethionema arabicum HOM05D004573 ORTHO05D005764 6.3e-50 202.2 336 40.5
Zm00001eb260950 Zea mays HOM05D004573 ORTHO05D005764 8.5e-47 191.8 336 38.4
CDE04G1394 Ceratophyllum demersum HOM05D004573 ORTHO05D005764 4.2e-46 189.5 349 35.8
Os01g0973300 Oryza sativa ssp. japonica HOM05D004573 ORTHO05D005764 1.8e-36 157.5 339 33.9
SHI22769 Sapria himalayana HOM05D004573 ORTHO05D005764 3.8e-31 139.8 325 36.9
unitig_21.g20296 Utricularia gibba HOM05D004573 ORTHO05D005764 6.1e-29 132.5 292 35.6
Mapoly0053s0031 Marchantia polymorpha HOM05D004573 ORTHO05D005764 4.1e-17 93.2 414 29.0
SMO230G0031 Selaginella moellendorffii HOM05D004573 ORTHO05D005764 5.6e-14 82.8 322 28.0
SEGI_25143 Sequoiadendron giganteum HOM05D004573 ORTHO05D005764 6.2e-13 79.3 142 36.6
AagrBONN_evm.TU.Sc2ySwM_228.842 Anthoceros agrestis HOM05D004573 ORTHO05D005764 4.0e-12 76.6 413 25.4
Atru.chr12.431 Acer truncatum HOM05D004573 ORTHO05D005764 9.8e-11 72.0 46 76.1
Pp3c8_13030 Physcomitrium patens HOM05D004573 ORTHO05D005764 1.7e-10 71.2 386 26.2
Pp3c8_13033 Physcomitrium patens HOM05D004573 ORTHO05D005764 1.7e-10 71.2 386 26.2
PRCOL_00005543 Prasinoderma coloniale HOM05D004573 ORTHO05D005764 2.3e-07 60.8 326 27.6


User provided reference genes

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