Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 1.1e-62 243.4 145 100.0
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 1.3e-44 183.3 144 68.8
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 4.2e-43 178.3 117 76.9
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 5.4e-43 177.9 144 67.4
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 7.1e-43 177.6 139 67.6
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 2.1e-42 176.0 117 76.1
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 2.7e-42 175.6 141 67.4
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 4.6e-42 174.9 117 76.1
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.6e-42 174.9 144 66.7
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 6.0e-42 174.5 142 64.8
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.7e-41 172.9 117 75.2
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 2.3e-41 172.6 143 65.0
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.3e-41 172.6 117 75.2
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 2.3e-41 172.6 117 75.2
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 2.3e-41 172.6 117 73.5
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 2.3e-41 172.6 136 66.9
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 3.9e-41 171.8 117 74.4
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 6.6e-41 171.0 117 74.4
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 6.6e-41 171.0 117 74.4
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 6.6e-41 171.0 141 65.2
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 6.6e-41 171.0 142 64.1
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 8.7e-41 170.6 117 73.5
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.1e-40 170.2 136 65.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.9e-40 169.5 117 75.2
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 2.5e-40 169.1 117 70.9
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 3.3e-40 168.7 117 72.6
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 4.3e-40 168.3 117 70.9
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 4.3e-40 168.3 117 70.9
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 5.6e-40 167.9 117 73.5
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 7.3e-40 167.5 117 75.2
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.6e-39 166.4 117 72.6
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 2.8e-39 165.6 146 63.0
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 8.1e-39 164.1 142 67.6
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 8.1e-39 164.1 136 66.9
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.8e-38 162.9 140 62.1
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 2.4e-38 162.5 117 73.5
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 4.0e-38 161.8 117 73.5
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 5.3e-38 161.4 117 71.8
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 5.3e-38 161.4 117 67.5
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 5.3e-38 161.4 117 69.2
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 6.9e-38 161.0 117 69.2
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-37 160.2 117 69.2
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 1.5e-37 159.8 117 69.2
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 1.5e-37 159.8 117 69.2
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 1.5e-37 159.8 117 69.2
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.5e-37 159.8 118 70.3
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 2.6e-37 159.1 114 71.9
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 2.6e-37 159.1 117 69.2
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 2.6e-37 159.1 117 72.6
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 3.4e-37 158.7 117 66.7
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 3.4e-37 158.7 116 68.1
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 4.5e-37 158.3 117 69.2
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 4.5e-37 158.3 144 59.7
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 9.9e-37 157.1 117 66.7
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.3e-36 156.8 114 69.3
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 1.3e-36 156.8 117 72.6
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 1.7e-36 156.4 106 71.7
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 1.7e-36 156.4 117 67.5
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 2.2e-36 156.0 137 65.0
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 2.9e-36 155.6 83 88.0
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 4.9e-36 154.8 113 71.7
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.9e-36 154.8 116 69.8
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.9e-36 154.8 116 69.8
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 6.4e-36 154.5 113 69.9
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 6.4e-36 154.5 113 67.3
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 8.4e-36 154.1 113 69.9
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 8.4e-36 154.1 117 66.7
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 8.4e-36 154.1 113 64.6
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.1e-35 153.7 116 68.1
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 5.4e-35 151.4 116 68.1
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 7.1e-35 151.0 114 65.8
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 7.1e-35 151.0 117 65.8
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.6e-34 149.8 144 52.8
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 2.7e-34 149.1 113 64.6
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 3.5e-34 148.7 116 64.7
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 4.6e-34 148.3 117 64.1
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 6.0e-34 147.9 117 63.2
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 7.9e-34 147.5 116 65.5
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 1.3e-33 146.7 115 64.3
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 1.8e-33 146.4 119 60.5
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.3e-33 146.0 111 64.9
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 3.0e-33 145.6 116 63.8
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 3.9e-33 145.2 118 62.7
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 5.1e-33 144.8 115 63.5
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.1e-32 143.7 126 56.3
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 1.9e-32 142.9 114 64.0
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 1.9e-32 142.9 114 64.0
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 1.9e-32 142.9 114 64.0
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 1.9e-32 142.9 114 64.0
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.9e-32 142.9 80 82.5
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 1.9e-32 142.9 129 58.9
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 2.5e-32 142.5 125 59.2
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 3.3e-32 142.1 99 69.7
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 9.6e-32 140.6 124 55.6
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 9.6e-32 140.6 126 56.3
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.3e-31 140.2 101 67.3
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 1.3e-31 140.2 121 58.7
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 1.3e-31 140.2 116 59.5
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.6e-31 139.8 83 75.9
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.1e-31 139.4 82 76.8
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 2.1e-31 139.4 129 55.0
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 2.8e-31 139.0 101 66.3
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 2.8e-31 139.0 101 66.3
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 3.7e-31 138.7 121 59.5
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.8e-31 138.3 80 80.0
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 4.8e-31 138.3 82 76.8
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 4.8e-31 138.3 82 76.8
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 4.8e-31 138.3 119 58.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 8.1e-31 137.5 144 50.7
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 1.1e-30 137.1 101 65.3
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 2.4e-30 136.0 101 65.3
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 3.1e-30 135.6 83 73.5
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 3.1e-30 135.6 120 57.5
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 4.0e-30 135.2 83 72.3
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 5.3e-30 134.8 116 54.3
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 2.0e-29 132.9 83 74.7
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 2.6e-29 132.5 118 60.2
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 3.4e-29 132.1 85 74.1
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 1.3e-28 130.2 83 68.7
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.7e-28 129.8 120 56.7
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.2e-28 129.4 83 68.7
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 4.9e-28 128.3 83 66.3
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 1.4e-27 126.7 82 70.7
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.9e-27 126.3 82 72.0
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 2.4e-27 125.9 82 72.0
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 7.1e-27 124.4 116 56.0
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 2.3e-25 119.4 82 65.9
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 6.2e-23 111.3 82 63.4
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 5.3e-22 108.2 82 59.8
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.6e-21 105.9 92 54.3
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.2e-19 98.6 82 57.3
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 4.2e-19 98.6 53 81.1
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 5.5e-19 98.2 83 56.6
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.6e-15 86.7 82 50.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.7e-13 77.8 82 43.9
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 1.7e-12 76.6 91 36.3
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-10 70.5 86 44.2
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-10 70.5 86 44.2
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-10 70.5 86 44.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 4.6e-10 68.6 72 44.4
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-06 57.4 75 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 1.8e-06 56.6 71 39.4
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 2.4e-06 56.2 71 39.4


User provided reference genes

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