Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c35313 Carica papaya HOM05D000221 ORTHO05D001308 3.4e-10 67.0 36 100.0
Manes.04G118600 Manihot esculenta HOM05D000221 ORTHO05D001308 3.7e-09 63.5 36 91.7
Manes.11G049100 Manihot esculenta HOM05D000221 ORTHO05D001308 3.7e-09 63.5 36 91.7
Glyma.04G149200 Glycine max HOM05D000221 ORTHO05D001308 6.3e-09 62.8 36 88.9
VMungo1309G2231 Vigna mungo HOM05D000221 ORTHO05D001308 6.3e-09 62.8 36 88.9
Manes.06G051000 Manihot esculenta HOM05D000221 ORTHO05D001308 1.1e-08 62.0 36 88.9
Ciclev10010700m.g Citrus clementina HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Gohir.A13G198200 Gossypium hirsutum HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Gohir.D13G203700 Gossypium hirsutum HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Gorai.013G232500 Gossypium raimondii HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Lalb_Chr08g0234891 Lupinus albus HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Lalb_Chr11g0072021 Lupinus albus HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
Manes.14G128100 Manihot esculenta HOM05D000221 ORTHO05D001308 1.4e-08 61.6 36 88.9
MELO3C023389.2 Cucumis melo HOM05D000221 ORTHO05D001308 2.4e-08 60.8 36 88.9
CsaV3_7G032770 Cucumis sativus L. HOM05D000221 ORTHO05D001308 2.4e-08 60.8 36 88.9
Phvul.009G199100 Phaseolus vulgaris HOM05D000221 ORTHO05D001308 2.4e-08 60.8 36 86.1
Hund00566 Selenicereus undatus HOM05D000221 ORTHO05D001308 2.4e-08 60.8 36 91.7
Duzib187G0118 Durio zibethinus HOM05D000221 ORTHO05D001308 3.1e-08 60.5 36 86.1
EL10Ac9g21960 Beta vulgaris HOM05D000221 ORTHO05D001308 4.1e-08 60.1 36 91.7
ClCG09G002550 Citrullus lanatus HOM05D000221 ORTHO05D001308 4.1e-08 60.1 36 88.9
Sed0013313 Sechium edule HOM05D000221 ORTHO05D001308 4.1e-08 60.1 36 88.9
Sc09g0007010 Simmondsia chinensis HOM05D000221 ORTHO05D001308 4.1e-08 60.1 36 91.7
CDE06G2552 Ceratophyllum demersum HOM05D002422 ORTHO05D002569 5.4e-08 59.7 36 86.1
Hund06590 Selenicereus undatus HOM05D000221 ORTHO05D001308 5.4e-08 59.7 36 91.7
AUR62011586 Chenopodium quinoa HOM05D000221 ORTHO05D001308 7.0e-08 59.3 36 88.9
AUR62016399 Chenopodium quinoa HOM05D000221 ORTHO05D001308 7.0e-08 59.3 36 88.9
Duzib168G1021 Durio zibethinus HOM05D000221 ORTHO05D001308 7.0e-08 59.3 36 86.1
RcHm_v2.0_Chr2g0089481 Rosa chinensis HOM05D000221 ORTHO05D001308 7.0e-08 59.3 36 86.1
GSVIVG01035768001 Vitis vinifera HOM05D000221 ORTHO05D001308 9.1e-08 58.9 36 88.9
Ciclev10026746m.g Citrus clementina HOM05D000221 ORTHO05D001308 1.2e-07 58.5 37 86.5
Manes.03G018100 Manihot esculenta HOM05D000221 ORTHO05D001308 1.2e-07 58.5 36 83.3
Sc12g0008940 Simmondsia chinensis HOM05D000221 ORTHO05D001308 1.2e-07 58.5 36 88.9
arahy.Tifrunner.gnm1.ann1.Q86WCF Arachis hypogaea HOM05D000221 ORTHO05D001308 1.6e-07 58.2 36 86.1
arahy.Tifrunner.gnm1.ann1.W67DNC Arachis hypogaea HOM05D000221 ORTHO05D001308 1.6e-07 58.2 36 86.1
Eucgr.J03033 Eucalyptus grandis HOM05D000221 ORTHO05D001308 1.6e-07 58.2 36 86.1
Glyma.06G214900 Glycine max HOM05D000221 ORTHO05D001308 1.6e-07 58.2 37 86.5
Dinv11603 Davidia involucrata HOM05D000221 ORTHO05D001308 2.0e-07 57.8 36 86.1
THA.LOC104818042 Tarenaya hassleriana HOM05D000221 ORTHO05D001308 2.0e-07 57.8 36 83.3
TAR625G0339 Trochodendron aralioides HOM05D000221 ORTHO05D001308 2.0e-07 57.8 36 91.7
Nn2g11914 Nelumbo nucifera HOM05D000221 ORTHO05D001308 2.7e-07 57.4 38 86.8
COL.COLO4_34984 Corchorus olitorius HOM05D000221 ORTHO05D001308 3.5e-07 57.0 37 86.5
Glyma.17G207100 Glycine max HOM05D000221 ORTHO05D001308 3.5e-07 57.0 36 83.3
HanXRQChr03g0062201 Helianthus annuus HOM05D000221 ORTHO05D001308 3.5e-07 57.0 36 83.3
Nitab4.5_0003235g0030 Nicotiana tabacum HOM05D000221 ORTHO05D001308 3.5e-07 57.0 36 88.9
Nitab4.5_0006991g0010 Nicotiana tabacum HOM05D000221 ORTHO05D001308 3.5e-07 57.0 36 88.9
AL1G61060 Arabidopsis lyrata HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 83.3
AT1G52740 Arabidopsis thaliana HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 83.3
Carub.0001s4182 Capsella rubella HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 83.3
FAN23G2787 Fragaria x ananassa HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 83.3
FAN28G2569 Fragaria x ananassa HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 83.3
Lsat_1_v5_gn_5_132800 Lactuca sativa HOM05D000221 ORTHO05D001308 4.5e-07 56.6 37 83.8
MBI11_g26136_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 77.8
Nn1g02514 Nelumbo nucifera HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 77.8
Nn3g19468 Nelumbo nucifera HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 77.8
TAR365G0032 Trochodendron aralioides HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 77.8
TAR636G1574 Trochodendron aralioides HOM05D000221 ORTHO05D001308 4.5e-07 56.6 36 77.8
Aa31LG10G2300 Aethionema arabicum HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
BcaC09g48529 Brassica carinata HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
A01p38470 Brassica napus HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
C01p48800 Brassica napus HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
BolC1t04835H Brassica oleracea HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
BraA01t03897Z Brassica rapa HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
CARHR042880 Cardamine hirsuta HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
Lj1g0019352 Lotus japonicus HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 86.1
Sp1g39310 Schrenkiella parvula HOM05D000221 ORTHO05D001308 5.9e-07 56.2 36 83.3
GSVIVG01017218001 Vitis vinifera HOM05D000221 ORTHO05D001308 5.9e-07 56.2 38 84.2
Ah.01g020950 Amaranthus hybridus HOM05D000221 ORTHO05D001308 7.7e-07 55.8 36 88.9
Thhalv10011855m.g Eutrema salsugineum HOM05D000221 ORTHO05D001308 7.7e-07 55.8 36 80.6
Thecc.09G119500 Theobroma cacao HOM05D000221 ORTHO05D001308 7.7e-07 55.8 37 83.8
Aqoxy2G03494 Aquilegia oxysepala HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 75.0
Aqoxy5G00376 Aquilegia oxysepala HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 75.0
COL.COLO4_12867 Corchorus olitorius HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 83.3
Dinv30556 Davidia involucrata HOM05D000221 ORTHO05D001308 1.0e-06 55.5 40 82.5
Dinv38081 Davidia involucrata HOM05D000221 ORTHO05D001308 1.0e-06 55.5 40 82.5
Gohir.A02G123700 Gossypium hirsutum HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 83.3
Gohir.D03G065900 Gossypium hirsutum HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 83.3
Gorai.002G056500 Gossypium raimondii HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 83.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-06 55.5 36 75.0
PSO210G7111 Papaver somniferum HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 75.0
PGR031G1919 Punica granatum HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 88.9
Rhsim12G0194800 Rhododendron simsii HOM05D000221 ORTHO05D001308 1.0e-06 55.5 41 82.9
Sabra18G0032900 Salix brachista HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 77.8
Thecc.06G076700 Theobroma cacao HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 83.3
TAR636G0492 Trochodendron aralioides HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 88.9
vmacro16930 Vaccinium macrocarpon HOM05D000221 ORTHO05D001308 1.0e-06 55.5 41 82.9
HPP92_014054 Vanilla planifolia HOM05D000221 ORTHO05D001308 1.0e-06 55.5 36 75.0
CDE02G1454 Ceratophyllum demersum HOM05D000221 ORTHO05D001308 1.3e-06 55.1 36 75.0
Cc04_g03840 Coffea canephora HOM05D000221 ORTHO05D001308 1.3e-06 55.1 36 88.9
Duzib160G0064 Durio zibethinus HOM05D000221 ORTHO05D001308 1.3e-06 55.1 36 80.6
Duzib235G0184 Durio zibethinus HOM05D000221 ORTHO05D001308 1.3e-06 55.1 36 80.6
Gohir.A05G124400 Gossypium hirsutum HOM05D000221 ORTHO05D001308 1.3e-06 55.1 36 80.6
TWI18G1457 Tripterygium wilfordii HOM05D000221 ORTHO05D001308 1.3e-06 55.1 39 87.2
MSTRG.11758 Avicennia marina HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 81.1
MSTRG.1642 Avicennia marina HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 81.1
CSS0021180 Camellia sinensis var. sinensis HOM05D000221 ORTHO05D001308 1.7e-06 54.7 40 82.5
CSS0044775 Camellia sinensis var. sinensis HOM05D000221 ORTHO05D001308 1.7e-06 54.7 40 82.5
CANSAT25G1644 Cannabis sativa HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 83.8
Thhalv10021747m.g Eutrema salsugineum HOM05D000221 ORTHO05D001308 1.7e-06 54.7 36 80.6
FvH4_1g04010 Fragaria vesca HOM05D000221 ORTHO05D001308 1.7e-06 54.7 36 80.6
FAN19G0961 Fragaria x ananassa HOM05D000221 ORTHO05D001308 1.7e-06 54.7 36 80.6
FAN26G1851 Fragaria x ananassa HOM05D000221 ORTHO05D001308 1.7e-06 54.7 36 80.6
Psat6g029960 Pisum sativum HOM05D000221 ORTHO05D001308 1.7e-06 54.7 36 83.3
SalBow4G2154 Salvia bowleyana HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 81.1
SGA_v2.0_scaffold22G09941 Striga asiatica HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 81.1
TPR.G1707 Trifolium pratense HOM05D000221 ORTHO05D001308 1.7e-06 54.7 37 83.8
HPP92_010053 Vanilla planifolia HOM05D000221 ORTHO05D001308 1.7e-06 54.7 38 84.2
HPP92_010067 Vanilla planifolia HOM05D000221 ORTHO05D001308 1.7e-06 54.7 38 84.2
HPP92_024133 Vanilla planifolia HOM05D000221 ORTHO05D001308 1.7e-06 54.7 38 84.2
MSTRG.25858 Avicennia marina HOM05D000221 ORTHO05D001308 2.2e-06 54.3 37 81.1
Dinv41549 Davidia involucrata HOM05D000221 ORTHO05D001308 2.2e-06 54.3 38 81.6
Medtr1g011750 Medicago truncatula HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 80.6
Medtr1g011850 Medicago truncatula HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 80.6
Potri.006G249300 Populus trichocarpa HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
Potri.006G249400 Populus trichocarpa HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
Potri.018G032100 Populus trichocarpa HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
QL02p023374 Quercus lobata HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 80.6
QL02p087065 Quercus lobata HOM05D000221 ORTHO05D001308 2.2e-06 54.3 37 81.1
Sabra06G0195100 Salix brachista HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
Sabra06G0195200 Salix brachista HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
Sabra18G0033000 Salix brachista HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 77.8
GSVIVG01003139001 Vitis vinifera HOM05D000221 ORTHO05D001308 2.2e-06 54.3 36 72.2
Dinv22490 Davidia involucrata HOM05D000221 ORTHO05D001308 2.9e-06 53.9 36 72.2
Dinv34557 Davidia involucrata HOM05D000221 ORTHO05D001308 2.9e-06 53.9 36 72.2
TWI12G0792 Tripterygium wilfordii HOM05D000221 ORTHO05D001308 2.9e-06 53.9 39 84.6
TAR383G0602 Trochodendron aralioides HOM05D000221 ORTHO05D001308 2.9e-06 53.9 38 84.2
Gohir.A09G084700 Gossypium hirsutum HOM05D000221 ORTHO05D001308 3.8e-06 53.5 36 80.6
Gorai.006G100600 Gossypium raimondii HOM05D000221 ORTHO05D001308 3.8e-06 53.5 36 80.6
PSO210G7411 Papaver somniferum HOM05D000221 ORTHO05D001308 3.8e-06 53.5 36 72.2
PSO832G3189 Papaver somniferum HOM05D000221 ORTHO05D001308 3.8e-06 53.5 36 72.2
Prupe.1G472200 Prunus persica HOM05D000221 ORTHO05D001308 3.8e-06 53.5 38 81.6
Carub.0003s1535 Capsella rubella HOM05D000221 ORTHO05D001308 5.0e-06 53.1 36 77.8
CDE05G2933 Ceratophyllum demersum HOM05D000221 ORTHO05D001308 5.0e-06 53.1 36 72.2
RcHm_v2.0_Chr6g0298761 Rosa chinensis HOM05D000221 ORTHO05D001308 5.0e-06 53.1 37 81.1
CARHR090690 Cardamine hirsuta HOM05D000221 ORTHO05D001308 6.5e-06 52.8 36 77.8
Potri.018G032000 Populus trichocarpa HOM05D000221 ORTHO05D001308 6.5e-06 52.8 36 75.0
Sp3g13890 Schrenkiella parvula HOM05D000221 ORTHO05D001308 6.5e-06 52.8 36 77.8
Actinidia08819 Actinidia chinensis HOM05D000221 ORTHO05D001308 8.5e-06 52.4 40 80.0
arahy.Tifrunner.gnm1.ann1.94RAPG Arachis hypogaea HOM05D000602 ORTHO05D002573 8.5e-06 52.4 39 76.9
MSTRG.13990 Avicennia marina HOM05D000221 ORTHO05D001308 8.5e-06 52.4 37 78.4
Ca_09719_v3 Cicer arietinum L. HOM05D000221 ORTHO05D001308 8.5e-06 52.4 36 69.4
Lj5C67T14 Lonicera japonica HOM05D000221 ORTHO05D001308 8.5e-06 52.4 40 80.0
MD00G1025700 Malus domestica HOM05D000221 ORTHO05D001308 8.5e-06 52.4 38 76.3
Medtr1g071040 Medicago truncatula HOM05D000221 ORTHO05D001308 8.5e-06 52.4 36 69.4
Oeu035414.1 Olea europaea HOM05D000221 ORTHO05D001308 8.5e-06 52.4 38 78.9
THA.LOC104798868 Tarenaya hassleriana HOM05D000221 ORTHO05D001308 8.5e-06 52.4 38 78.9
THA.LOC104809198 Tarenaya hassleriana HOM05D000221 ORTHO05D001308 8.5e-06 52.4 38 78.9
TPR.G39152 Trifolium pratense HOM05D000221 ORTHO05D001308 8.5e-06 52.4 36 69.4


User provided reference genes

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