Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.6e-87 325.1 191 100.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.8e-52 208.8 191 64.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.4e-43 180.3 191 57.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.0e-41 174.1 132 69.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-41 173.7 195 63.1
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.3e-41 173.7 132 69.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 3.0e-41 172.6 134 67.2
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.7e-41 171.0 133 68.4
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.7e-41 171.0 133 68.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 8.7e-41 171.0 133 68.4
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-40 170.6 133 68.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-40 170.6 133 67.7
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-40 170.6 133 67.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.1e-40 170.6 134 67.9
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.3e-40 169.1 132 67.4
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.4e-40 167.9 132 65.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.3e-39 167.2 134 66.4
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.3e-39 167.2 134 63.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.2e-39 166.4 134 62.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.3e-39 164.9 134 64.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 8.2e-39 164.5 134 64.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.2e-39 164.5 134 65.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.1e-38 164.1 132 63.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.8e-38 163.3 134 64.9
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.4e-38 162.9 133 67.7
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 3.1e-38 162.5 133 64.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 4.1e-38 162.2 132 63.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 9.1e-38 161.0 134 64.2
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 9.1e-38 161.0 134 64.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 9.1e-38 161.0 134 63.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 9.1e-38 161.0 134 65.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-37 160.6 134 62.7
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.2e-37 160.6 134 62.7
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-37 160.2 194 63.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-37 159.8 134 62.7
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.0e-37 159.8 134 64.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.6e-37 159.5 134 62.7
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.4e-37 159.1 131 64.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 4.5e-37 158.7 134 64.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 7.7e-37 157.9 134 62.7
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.7e-36 156.8 173 52.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.9e-36 156.0 133 61.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 3.8e-36 155.6 132 61.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.9e-35 153.3 138 62.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-35 152.1 134 59.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 9.4e-35 151.0 134 62.7
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-34 150.6 134 61.2
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.2e-34 150.6 191 53.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.2e-34 150.6 193 45.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 6.1e-34 148.3 131 59.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.9e-34 147.9 193 47.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.0e-33 147.5 132 59.8
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-33 147.1 132 62.1
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.4e-33 147.1 191 53.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-33 145.6 136 58.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.9e-33 145.6 132 58.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.9e-33 145.6 134 60.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 6.7e-33 144.8 132 59.8
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 6.7e-33 144.8 190 57.4
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.7e-33 144.8 133 60.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 8.8e-33 144.4 141 56.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.1e-32 144.1 134 56.7
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.0e-32 143.3 132 59.1
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.6e-32 142.9 136 58.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.6e-32 142.9 132 56.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.3e-32 142.5 134 57.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 5.7e-32 141.7 136 58.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.7e-32 141.7 132 57.6
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 9.7e-32 141.0 133 57.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.3e-31 140.6 191 43.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.7e-31 140.2 131 57.3
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.7e-31 140.2 128 58.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.7e-31 140.2 134 57.5
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.8e-31 139.4 132 56.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.3e-31 138.3 136 55.9
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 6.3e-31 138.3 133 57.1
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.1e-30 137.5 193 44.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.4e-30 137.1 133 56.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.8e-30 136.7 134 58.2
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.4e-30 136.3 128 57.0
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.1e-30 136.0 133 56.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 4.1e-30 135.6 131 55.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 6.9e-30 134.8 132 60.6
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 9.1e-30 134.4 134 56.7
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 9.1e-30 134.4 83 77.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.2e-29 134.0 135 55.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.4e-29 132.5 134 56.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.5e-29 132.1 132 56.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 5.9e-29 131.7 128 54.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 5.9e-29 131.7 132 53.0
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.0e-28 131.0 134 53.0
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-28 130.6 137 54.0
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.3e-28 130.6 134 57.5
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-28 130.2 134 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.8e-28 129.0 191 39.8
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 6.5e-28 128.3 134 53.7
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 6.5e-28 128.3 135 52.6
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 8.5e-28 127.9 134 53.7
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-27 127.5 91 64.8
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.9e-27 126.7 137 53.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.9e-27 126.7 134 56.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.5e-27 126.3 137 51.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 4.2e-27 125.6 150 48.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 7.2e-27 124.8 138 52.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.6e-26 123.6 134 54.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.1e-26 121.7 204 52.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.9e-26 121.3 132 52.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 7.9e-26 121.3 193 39.4
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.8e-25 120.2 107 56.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.8e-25 120.2 86 62.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.3e-25 119.8 208 47.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.3e-25 119.8 195 42.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.3e-25 119.8 135 51.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.3e-25 119.8 130 52.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 3.0e-25 119.4 134 50.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.9e-25 119.0 254 34.6
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-24 116.7 131 51.1
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.3e-24 115.9 142 55.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.7e-23 113.6 131 49.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.7e-23 113.6 132 48.5
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 6.3e-23 111.7 160 43.1
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.1e-22 109.4 133 44.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.0e-22 108.2 133 50.4
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-21 107.1 133 43.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 4.5e-21 105.5 192 43.8
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.0e-20 102.1 131 47.3
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 8.5e-20 101.3 138 42.0
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 8.5e-20 101.3 132 46.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.1e-18 96.7 211 37.4
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-18 95.9 146 37.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-16 90.9 146 37.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 5.7e-16 88.6 118 44.1
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 7.0e-14 81.6 117 43.6
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-13 80.1 111 48.6
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.7e-12 77.0 209 29.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.2e-10 70.9 86 41.9
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-10 68.9 104 48.1
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-09 67.4 88 38.6
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-09 67.4 88 38.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.8e-09 67.0 128 32.0
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.0e-09 65.9 243 30.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 6.8e-09 65.1 74 45.9
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.0e-08 63.5 82 48.8
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 7.0e-06 55.1 147 41.5


User provided reference genes

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