Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.7e-125 452.6 222 100.0
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 5.3e-114 414.5 222 88.7
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.0e-113 412.5 222 88.3
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.3e-112 409.8 221 88.2
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 1.3e-112 409.8 222 87.8
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.7e-112 409.5 222 87.4
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 6.5e-112 407.5 221 88.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 6.5e-112 407.5 222 86.9
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.4e-111 406.4 222 86.9
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 5.5e-111 404.4 222 87.4
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 9.3e-111 403.7 221 86.0
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 6.0e-110 401.0 222 86.5
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.0e-109 400.2 222 86.9
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.3e-109 399.8 222 86.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.8e-109 399.4 222 86.0
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.8e-109 399.4 222 84.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 3.0e-109 398.7 222 84.7
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.0e-109 398.7 222 86.0
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 3.0e-109 398.7 222 85.1
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.9e-109 398.3 222 86.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 3.9e-109 398.3 222 85.6
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.5e-108 396.4 222 85.1
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.5e-108 396.4 221 85.5
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.9e-108 396.0 222 84.7
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.5e-108 395.6 222 85.1
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 3.3e-108 395.2 222 84.7
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 9.6e-108 393.7 222 86.5
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.6e-107 392.9 221 85.5
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.6e-107 392.9 222 84.2
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 2.8e-107 392.1 222 83.8
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.8e-107 391.3 222 84.2
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 8.2e-107 390.6 222 84.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.1e-106 390.2 221 85.1
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.1e-106 390.2 222 84.7
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.4e-106 389.8 222 83.8
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 3.1e-106 388.7 222 83.3
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 3.1e-106 388.7 222 82.9
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 3.1e-106 388.7 222 84.2
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.1e-106 388.7 222 83.8
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 5.3e-106 387.9 222 82.4
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 5.3e-106 387.9 222 82.9
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 5.3e-106 387.9 221 86.0
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 6.9e-106 387.5 222 83.8
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.6e-105 385.6 222 82.9
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 4.5e-105 384.8 222 84.7
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 7.6e-105 384.0 222 82.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.0e-104 383.6 222 83.3
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.0e-104 383.6 222 82.4
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.3e-104 383.3 222 82.0
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.2e-104 382.5 222 82.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 2.2e-104 382.5 222 82.0
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.2e-104 382.5 255 75.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.0e-104 381.3 222 82.4
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 6.5e-104 380.9 221 82.4
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 6.5e-104 380.9 222 81.1
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 6.5e-104 380.9 222 81.1
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 8.4e-104 380.6 222 81.5
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 8.4e-104 380.6 222 81.5
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.1e-103 380.2 222 81.1
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.1e-103 380.2 221 81.9
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.2e-103 378.6 222 80.6
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 7.2e-103 377.5 253 74.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.6e-102 376.3 222 80.6
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 2.7e-102 375.6 222 82.9
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 6.1e-102 374.4 222 79.3
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 7.9e-102 374.0 222 79.7
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 1.3e-101 373.2 222 79.3
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.3e-101 373.2 221 80.1
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.0e-101 372.1 221 79.6
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 5.1e-101 371.3 222 79.3
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 5.1e-101 371.3 222 79.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 8.7e-101 370.5 221 81.4
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.1e-100 370.2 221 81.9
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.5e-100 369.8 222 79.3
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 2.5e-100 369.0 222 77.9
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.5e-100 369.0 257 71.6
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 3.3e-100 368.6 221 81.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 3.3e-100 368.6 221 81.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 4.3e-100 368.2 221 81.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 4.3e-100 368.2 221 81.4
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 4.3e-100 368.2 221 81.4
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 7.4e-100 367.5 221 81.0
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 7.4e-100 367.5 222 79.3
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 2.2e-99 365.9 221 79.2
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 2.8e-99 365.5 221 79.6
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 8.2e-99 364.0 221 79.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.4e-98 362.5 221 76.5
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.5e-97 358.2 208 84.1
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 4.5e-97 358.2 221 77.8
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 4.2e-95 351.7 208 81.7
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 5.5e-95 351.3 222 77.9
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.6e-94 348.2 222 73.4
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 6.1e-94 347.8 238 73.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.8e-91 339.0 222 74.3
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.2e-87 325.5 221 73.3
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.6e-86 322.0 188 80.9
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.8e-85 319.7 207 72.9
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 3.5e-81 305.4 214 68.2
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 2.9e-80 302.4 211 66.4
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 4.2e-79 298.5 217 65.4
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 3.2e-63 245.7 183 69.9
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.2e-62 243.8 147 79.6
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 8.0e-62 241.1 211 58.3
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.8e-58 229.9 337 43.0
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 4.1e-58 228.8 153 75.2
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 4.1e-50 202.2 216 47.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 6.6e-48 194.9 116 73.3
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.8e-45 186.8 208 54.8
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 3.1e-45 186.0 212 42.9
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 4.0e-45 185.7 109 81.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 6.8e-45 184.9 184 58.2
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 8.9e-45 184.5 175 59.4
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 2.9e-43 179.5 181 54.7
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 8.3e-35 151.4 221 42.1
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 8.1e-30 134.8 93 71.0
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.1e-25 120.2 82 72.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 9.9e-20 101.3 59 81.4
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.4e-18 96.7 50 90.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.3e-15 86.3 60 68.3
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 6.9e-13 78.6 109 40.4
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.2e-12 77.8 59 64.4
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.3e-11 74.3 38 84.2
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.9e-11 73.2 36 88.9
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 5.4e-10 68.9 173 31.8
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 9.3e-10 68.2 36 83.3
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 6.0e-09 65.5 166 31.3
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 5.1e-08 62.4 168 30.4
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.1e-07 61.2 181 29.3
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.3e-07 59.7 115 40.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.3e-07 59.7 36 80.6
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 9.6e-07 58.2 159 30.8
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 1.6e-06 57.4 75 40.0
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 6.2e-06 55.5 42 69.0
Lsat_1_v5_gn_3_11781 Lactuca sativa HOM05D000104 ORTHO05D008354 6.2e-06 55.5 53 52.8
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 6.2e-06 55.5 167 28.7


User provided reference genes

Program Settings