Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33695 Carica papaya HOM05D000104 ORTHO05D005769 5.0e-76 287.7 150 100.0
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 6.2e-26 121.3 168 50.0
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 1.5e-24 116.7 152 53.3
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 1.7e-23 113.2 200 41.5
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 2.2e-23 112.8 153 48.4
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 1.4e-22 110.2 150 49.3
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 7.1e-22 107.8 132 50.0
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 7.1e-22 107.8 153 50.3
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 1.6e-21 106.7 153 49.0
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.6e-21 106.7 151 48.3
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 4.6e-21 105.1 151 47.7
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 4.6e-21 105.1 151 47.7
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 6.0e-21 104.8 150 49.3
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 7.9e-21 104.4 146 48.6
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 3.0e-20 102.4 132 50.0
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 3.9e-20 102.1 150 44.0
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 1.9e-19 99.8 151 45.7
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 2.5e-19 99.4 131 49.6
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 2.5e-19 99.4 131 48.9
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 3.3e-19 99.0 168 44.6
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 7.4e-19 97.8 166 44.0
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 9.7e-19 97.4 151 45.0
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 2.2e-18 96.3 150 44.0
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 2.2e-18 96.3 153 45.8
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 6.3e-18 94.7 150 42.7
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 1.4e-17 93.6 168 42.3
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 2.4e-17 92.8 150 46.0
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 2.4e-17 92.8 155 45.8
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 2.4e-17 92.8 152 45.4
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 3.1e-17 92.4 136 47.8
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 1.2e-16 90.5 150 43.3
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.2e-16 90.5 148 43.9
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 2.6e-16 89.4 150 45.3
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 2.6e-16 89.4 139 43.2
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 3.4e-16 89.0 150 42.7
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 4.5e-16 88.6 150 42.0
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 5.9e-16 88.2 151 42.4
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 1.3e-15 87.0 150 42.0
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 2.2e-15 86.3 150 43.3
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 2.9e-15 85.9 151 43.7
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 2.9e-15 85.9 217 33.6
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 1.4e-14 83.6 152 44.7
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 1.4e-14 83.6 140 40.7
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 1.9e-14 83.2 146 41.1
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 1.9e-14 83.2 151 45.0
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 2.5e-14 82.8 151 42.4
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 5.5e-14 81.6 149 41.6
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 5.5e-14 81.6 151 42.4
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 7.2e-14 81.3 155 41.3
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 2.7e-13 79.3 154 41.6
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 3.6e-13 79.0 92 53.3
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 3.6e-13 79.0 152 40.1
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 4.6e-13 78.6 173 37.0
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 1.4e-12 77.0 172 36.0
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 2.3e-12 76.3 149 42.3
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 3.9e-12 75.5 158 38.6
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 8.8e-12 74.3 151 37.7
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 8.8e-12 74.3 130 42.3
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 1.1e-11 73.9 150 40.0
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 1.5e-11 73.6 151 41.7
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 1.9e-11 73.2 147 39.5
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.5e-11 72.8 194 33.5
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 1.3e-10 70.5 194 33.0
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.3e-10 70.5 194 32.5
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 4.8e-10 68.6 132 37.9
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 6.3e-10 68.2 145 39.3
Lj3C921T8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.4e-09 67.0 148 37.2
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 1.4e-09 67.0 172 36.6
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.8e-09 66.6 194 32.0
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 2.4e-09 66.2 151 39.1
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 2.4e-09 66.2 142 36.6
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 3.1e-09 65.9 167 36.5
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 4.1e-09 65.5 226 30.1
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 9.1e-09 64.3 134 37.3
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.2e-08 63.9 56 66.1
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 2.0e-08 63.2 128 39.8
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 4.5e-08 62.0 161 35.4
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 4.5e-08 62.0 143 35.0
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 5.9e-08 61.6 197 30.5
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 1.0e-07 60.8 115 42.6
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 2.9e-07 59.3 97 40.2
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 6.5e-07 58.2 147 34.7
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 8.5e-07 57.8 140 34.3
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 1.4e-06 57.0 160 35.6
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 1.4e-06 57.0 84 46.4
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 1.9e-06 56.6 81 48.1
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 1.9e-06 56.6 48 66.7
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 2.5e-06 56.2 151 34.4
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 3.2e-06 55.8 106 43.4
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 4.2e-06 55.5 150 34.0
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 5.5e-06 55.1 162 35.2


User provided reference genes

Program Settings