Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 9.2e-39 162.9 74 100.0
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.1e-34 149.4 75 93.3
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.4e-34 148.3 75 92.0
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.4e-34 148.3 75 92.0
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 3.1e-34 147.9 75 90.7
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 4.0e-34 147.5 74 90.5
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.2e-33 146.0 73 94.5
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 2.0e-33 145.2 75 90.7
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 7.6e-33 143.3 75 85.3
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.3e-32 142.5 75 88.0
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.7e-32 142.1 75 89.3
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 2.2e-32 141.7 75 86.7
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 3.8e-32 141.0 75 85.3
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.9e-32 140.6 75 85.3
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 4.9e-32 140.6 75 82.7
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 4.9e-32 140.6 75 88.0
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 8.4e-32 139.8 75 85.3
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 8.4e-32 139.8 74 83.8
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.4e-31 139.0 75 81.3
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.9e-31 138.7 75 82.7
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 1.9e-31 138.7 75 82.7
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 1.9e-31 138.7 75 84.0
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 2.4e-31 138.3 75 84.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 2.4e-31 138.3 75 84.0
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 2.4e-31 138.3 74 83.8
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 2.4e-31 138.3 74 85.1
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.2e-31 137.9 75 82.7
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.2e-31 137.9 75 82.7
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.2e-31 137.9 75 82.7
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.2e-31 137.9 75 82.7
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 4.2e-31 137.5 75 84.0
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 7.1e-31 136.7 76 80.3
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 7.1e-31 136.7 75 81.3
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 7.1e-31 136.7 73 89.0
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 9.3e-31 136.3 75 81.3
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 1.2e-30 136.0 74 82.4
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.2e-30 136.0 75 81.3
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.2e-30 136.0 75 81.3
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.6e-30 135.6 75 84.0
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 2.1e-30 135.2 75 82.7
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 2.1e-30 135.2 75 80.0
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.7e-30 134.8 77 81.8
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 3.5e-30 134.4 75 81.3
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 3.5e-30 134.4 75 82.7
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 7.8e-30 133.3 75 81.3
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 7.8e-30 133.3 75 80.0
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 7.8e-30 133.3 73 83.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 1.0e-29 132.9 75 80.0
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.3e-29 132.5 75 78.7
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 1.7e-29 132.1 73 82.2
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 2.3e-29 131.7 75 77.3
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 3.0e-29 131.3 75 80.0
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 3.0e-29 131.3 75 80.0
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 3.9e-29 131.0 74 82.4
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 3.9e-29 131.0 75 76.0
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 3.9e-29 131.0 75 76.0
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 3.9e-29 131.0 74 78.4
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 5.1e-29 130.6 75 76.0
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 5.1e-29 130.6 75 78.7
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 8.7e-29 129.8 66 87.9
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.1e-28 129.4 73 78.1
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.9e-28 128.6 75 78.7
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 3.3e-28 127.9 73 78.1
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 3.3e-28 127.9 73 78.1
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 3.3e-28 127.9 73 78.1
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 5.6e-28 127.1 73 76.7
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 7.3e-28 126.7 73 76.7
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 7.3e-28 126.7 73 78.1
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 9.6e-28 126.3 75 74.7
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 9.6e-28 126.3 70 80.0
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.3e-27 125.9 75 74.7
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 1.6e-27 125.6 75 74.7
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.6e-27 125.6 74 75.7
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 2.1e-27 125.2 73 76.7
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 4.8e-27 124.0 75 77.3
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.1e-26 122.9 75 73.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.1e-26 122.9 73 75.3
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 1.1e-26 122.9 75 73.3
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.4e-26 122.5 75 74.7
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 3.1e-26 121.3 74 78.4
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 4.0e-26 120.9 73 75.3
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 1.2e-25 119.4 73 72.6
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 1.5e-25 119.0 75 73.3
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.5e-25 119.0 69 76.8
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.5e-25 119.0 75 69.3
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 1.5e-25 119.0 75 69.3
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 3.4e-25 117.9 73 72.6
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 3.4e-25 117.9 69 76.8
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.4e-25 117.9 69 76.8
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.4e-25 117.9 69 76.8
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 5.8e-25 117.1 75 68.0
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.3e-24 115.9 74 73.0
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.3e-24 115.9 75 69.3
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 2.9e-24 114.8 75 68.0
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 3.8e-24 114.4 75 65.3
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 4.9e-24 114.0 75 68.0
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.9e-23 112.1 76 68.4
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.2e-23 111.3 76 64.5
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 3.2e-23 111.3 74 67.6
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 3.2e-23 111.3 74 67.6
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 7.1e-23 110.2 73 65.8
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 7.1e-23 110.2 73 65.8
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 7.1e-23 110.2 73 68.5
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 7.1e-23 110.2 72 63.9
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.2e-22 109.4 73 65.8
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 4.6e-22 107.5 72 63.9
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 7.8e-22 106.7 74 66.2
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.3e-21 105.1 75 64.0
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 2.5e-20 101.7 123 43.9
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 3.3e-20 101.3 76 64.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.3e-19 99.4 72 58.3
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 8.1e-19 96.7 78 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 3.4e-17 91.3 75 56.0
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.9e-16 88.2 69 56.5
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.9e-16 88.2 69 56.5
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 2.1e-14 82.0 39 87.2
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.4e-10 68.6 45 68.9
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 7.6e-09 63.5 83 38.6
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 4.6e-06 54.3 39 66.7


User provided reference genes

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