Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c31263 Carica papaya HOM05D006490 ORTHO05D008301 1.4e-107 392.9 193 100.0
Cpa.g.sc18.200 Carica papaya HOM05D006490 ORTHO05D008301 1.3e-97 359.8 193 93.3
Cpa.g.sc1680.2 Carica papaya HOM05D006490 ORTHO05D008301 4.6e-29 132.1 203 46.8
TAR656G0005 Trochodendron aralioides HOM05D006490 ORTHO05D008301 5.4e-14 82.0 56 71.4
TAR003G0001 Trochodendron aralioides HOM05D006490 ORTHO05D008301 7.1e-14 81.6 56 71.4
CSS0016422 Camellia sinensis var. sinensis HOM05D006490 ORTHO05D008301 3.5e-13 79.3 54 70.4
AL1G10470 Arabidopsis lyrata HOM05D006490 ORTHO05D008301 1.3e-12 77.4 54 68.5
CANSAT56G3458 Cannabis sativa HOM05D006490 ORTHO05D008301 2.3e-12 76.6 66 56.1
Thhalv10008101m.g Eutrema salsugineum HOM05D006490 ORTHO05D008301 3.0e-12 76.3 54 66.7
Sp1g00430 Schrenkiella parvula HOM05D006490 ORTHO05D008301 3.0e-12 76.3 54 66.7
Atru.chr7.2364 Acer truncatum HOM05D006490 ORTHO05D008301 3.9e-12 75.9 54 61.1
AT1G01860 Arabidopsis thaliana HOM05D006490 ORTHO05D008301 6.6e-12 75.1 54 64.8
Cfa004180 Carpinus fangiana HOM05D006490 ORTHO05D008301 8.6e-12 74.7 55 69.1
Thecc.01G368800 Theobroma cacao HOM05D006490 ORTHO05D008301 1.1e-11 74.3 54 63.0
COL.COLO4_12627 Corchorus olitorius HOM05D006490 ORTHO05D008301 1.5e-11 73.9 54 63.0
Nn1g01348 Nelumbo nucifera HOM05D006490 ORTHO05D008301 4.3e-11 72.4 54 64.8
Gohir.D11G088800 Gossypium hirsutum HOM05D006490 ORTHO05D008301 7.3e-11 71.6 54 63.0
Gorai.007G094900 Gossypium raimondii HOM05D006490 ORTHO05D008301 7.3e-11 71.6 54 63.0
Hma1.2p1_0398F.1_g143810 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 7.3e-11 71.6 54 64.8
Prupe.2G154300 Prunus persica HOM05D006490 ORTHO05D008301 7.3e-11 71.6 54 63.0
Haze_15229 Corylus avellana HOM05D006490 ORTHO05D008301 1.2e-10 70.9 55 67.3
Gohir.A11G084700 Gossypium hirsutum HOM05D006490 ORTHO05D008301 1.6e-10 70.5 54 61.1
FAN03G0539 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 64.8
FAN06G1200 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 64.8
FAN06G2547 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 64.8
FAN10G0695 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 64.8
FAN10G3169 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 64.8
Potri.014G077100 Populus trichocarpa HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 63.0
GSVIVG01027529001 Vitis vinifera HOM05D006490 ORTHO05D008301 2.1e-10 70.1 54 63.0
Ciclev10020970m.g Citrus clementina HOM05D006490 ORTHO05D008301 2.8e-10 69.7 54 66.7
RcHm_v2.0_Chr1g0352201 Rosa chinensis HOM05D006490 ORTHO05D008301 2.8e-10 69.7 54 64.8
THA.LOC104814092 Tarenaya hassleriana HOM05D006490 ORTHO05D008301 2.8e-10 69.7 54 59.3
Duzib138G1247 Durio zibethinus HOM05D006490 ORTHO05D008301 3.6e-10 69.3 54 61.1
Sabra14G0055100 Salix brachista HOM05D006490 ORTHO05D008301 6.2e-10 68.6 54 59.3
AUR62033365 Chenopodium quinoa HOM05D006490 ORTHO05D008301 8.1e-10 68.2 54 57.4
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 1.1e-09 67.8 54 59.3
C08p53880 Brassica napus HOM05D002904 ORTHO05D003206 1.1e-09 67.8 54 61.1
BolC8t52902H Brassica oleracea HOM05D002904 ORTHO05D003206 1.1e-09 67.8 54 61.1
BraA09t42265Z Brassica rapa HOM05D002904 ORTHO05D003206 1.1e-09 67.8 54 61.1
Actinidia33445 Actinidia chinensis HOM05D006490 ORTHO05D008301 1.4e-09 67.4 54 57.4
EL10Ac1g00964 Beta vulgaris HOM05D006490 ORTHO05D008301 1.4e-09 67.4 54 57.4
Carub.0001s0036 Capsella rubella HOM05D006490 ORTHO05D008301 1.4e-09 67.4 54 64.8
AUR62004290 Chenopodium quinoa HOM05D006490 ORTHO05D008301 1.4e-09 67.4 56 55.4
Sc02g0002220 Simmondsia chinensis HOM05D006490 ORTHO05D008301 1.4e-09 67.4 54 61.1
DCAR_023894 Daucus carota HOM05D006490 ORTHO05D008301 5.2e-09 65.5 54 55.6
vmacro20973 Vaccinium macrocarpon HOM05D006490 ORTHO05D008301 5.2e-09 65.5 198 32.3
CARHR000480 Cardamine hirsuta HOM05D006490 ORTHO05D008301 6.8e-09 65.1 43 67.4
Hma1.2p1_0398F.1_g143820 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 6.8e-09 65.1 50 66.0
Manes.05G040300 Manihot esculenta HOM05D006490 ORTHO05D008301 1.2e-08 64.3 54 57.4
Hund27326 Selenicereus undatus HOM05D006490 ORTHO05D008301 1.2e-08 64.3 54 55.6
MD07G1128700 Malus domestica HOM05D006490 ORTHO05D008301 2.0e-08 63.5 54 61.1
TWI59G0097 Tripterygium wilfordii HOM05D006490 ORTHO05D008301 2.6e-08 63.2 194 30.4
Aqoxy5G03982 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 3.4e-08 62.8 54 55.6
MSTRG.17232 Avicennia marina HOM05D006490 ORTHO05D008301 4.4e-08 62.4 54 57.4
MBI12_g25032_MAGBIO Magnolia biondii HOM05D006490 ORTHO05D008301 5.8e-08 62.0 53 56.6
PGR031G3648 Punica granatum HOM05D006490 ORTHO05D008301 5.8e-08 62.0 54 59.3
Ah.05g176030 Amaranthus hybridus HOM05D006490 ORTHO05D008301 9.9e-08 61.2 54 50.0
CiPaw.01G023700 Carya illinoinensis HOM05D006490 ORTHO05D008301 9.9e-08 61.2 55 58.2
CiPaw.01G053400 Carya illinoinensis HOM05D006490 ORTHO05D008301 9.9e-08 61.2 55 58.2
SGA_v2.0_scaffold153G37067 Striga asiatica HOM05D006490 ORTHO05D008301 9.9e-08 61.2 49 59.2
CDE12G0440 Ceratophyllum demersum HOM05D006490 ORTHO05D008301 1.3e-07 60.8 54 57.4
Peaxi162Scf00021g00524 Petunia axillaris HOM05D006490 ORTHO05D008301 1.3e-07 60.8 54 51.9
unitig_26.g9312 Utricularia gibba HOM05D006490 ORTHO05D008301 2.2e-07 60.1 54 55.6
Lj9A577G54 Lonicera japonica HOM05D006490 ORTHO05D008301 2.9e-07 59.7 54 53.7
Lalb_Chr01g0021141 Lupinus albus HOM05D006490 ORTHO05D008301 3.7e-07 59.3 66 45.5
Rhsim01G0155600 Rhododendron simsii HOM05D006490 ORTHO05D008301 3.7e-07 59.3 88 42.0
Solyc01g091800.3 Solanum lycopersicum HOM05D006490 ORTHO05D008301 4.9e-07 58.9 55 52.7
PGSC0003DMG400017050 Solanum tuberosum HOM05D006490 ORTHO05D008301 4.9e-07 58.9 55 52.7
Cc02_g37220 Coffea canephora HOM05D006490 ORTHO05D008301 1.1e-06 57.8 54 53.7
Eucgr.D02236 Eucalyptus grandis HOM05D006490 ORTHO05D008301 1.4e-06 57.4 53 52.8
FAN01G0731 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.4e-06 57.4 41 65.9
Sed0027884 Sechium edule HOM05D006490 ORTHO05D008301 1.9e-06 57.0 56 51.8
MD06G1224300 Malus domestica HOM05D006490 ORTHO05D008301 2.4e-06 56.6 41 61.0
Sopen01g037580 Solanum pennellii HOM05D006490 ORTHO05D008301 2.4e-06 56.6 55 50.9
CAN.G170.51 Capsicum annuum HOM05D006490 ORTHO05D008301 3.2e-06 56.2 55 50.9
ClCG05G001900 Citrullus lanatus HOM05D006490 ORTHO05D008301 3.2e-06 56.2 56 51.8
MELO3C006150.2 Cucumis melo HOM05D006490 ORTHO05D008301 3.2e-06 56.2 56 51.8
PSO063G2041 Papaver somniferum HOM05D006490 ORTHO05D008301 4.1e-06 55.8 54 50.0
CsaV3_3G009300 Cucumis sativus L. HOM05D006490 ORTHO05D008301 5.4e-06 55.5 56 51.8
Cpa.g.c25091.2 Carica papaya HOM05D006490 ORTHO05D117507 9.2e-06 54.7 32 81.2
Nitab4.5_0010430g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 9.2e-06 54.7 55 49.1
Oeu024418.2 Olea europaea HOM05D006490 ORTHO05D008301 9.2e-06 54.7 54 50.0
TPR.G37730 Trifolium pratense HOM05D006490 ORTHO05D008301 9.2e-06 54.7 66 40.9


User provided reference genes

Program Settings