Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c29395 Carica papaya HOM05D000144 ORTHO05D007336 2.9e-16 87.4 43 100.0
Cpa.g.c27498 Carica papaya HOM05D000144 ORTHO05D007336 7.3e-12 72.8 43 81.4
Actinidia07228 Actinidia chinensis HOM05D000144 ORTHO05D007336 3.6e-11 70.5 43 76.7
Eucgr.J00461 Eucalyptus grandis HOM05D000144 ORTHO05D007336 4.7e-11 70.1 43 76.7
Nn6g34999 Nelumbo nucifera HOM05D000144 ORTHO05D007336 4.7e-11 70.1 43 76.7
TAR636G0978 Trochodendron aralioides HOM05D000144 ORTHO05D007336 4.7e-11 70.1 43 76.7
CAN.G644.8 Capsicum annuum HOM05D000144 ORTHO05D007336 6.2e-11 69.7 43 76.7
CiPaw.14G102500 Carya illinoinensis HOM05D000144 ORTHO05D007336 6.2e-11 69.7 43 76.7
Dinv42577 Davidia involucrata HOM05D000144 ORTHO05D007336 6.2e-11 69.7 43 76.7
Rhsim02G0084400 Rhododendron simsii HOM05D000144 ORTHO05D007336 6.2e-11 69.7 43 76.7
HPP92_001977 Vanilla planifolia HOM05D000144 ORTHO05D007336 6.2e-11 69.7 43 76.7
SEGI_41619 Sequoiadendron giganteum HOM05D000144 ORTHO05D007336 8.1e-11 69.3 43 74.4
Atru.chr3.3339 Acer truncatum HOM05D000144 ORTHO05D007336 1.1e-10 68.9 43 74.4
TWI79G0633 Tripterygium wilfordii HOM05D000144 ORTHO05D007336 1.1e-10 68.9 43 76.7
TWI79G1360 Tripterygium wilfordii HOM05D000144 ORTHO05D007336 1.1e-10 68.9 43 76.7
Cfa010061 Carpinus fangiana HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Haze_23428 Corylus avellana HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Hma1.2p1_0305F.1_g119430 Hydrangea macrophylla HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Hma1.2p1_0305F.1_g119440 Hydrangea macrophylla HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
PSO339G1139 Papaver somniferum HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 76.7
Peaxi162Scf00544g01012 Petunia axillaris HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
QL01p013297 Quercus lobata HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Solyc11g067090.2 Solanum lycopersicum HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Sopen11g026800 Solanum pennellii HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
PGSC0003DMG400007418 Solanum tuberosum HOM05D000144 ORTHO05D007336 1.4e-10 68.6 43 74.4
Ca_01669_v3 Cicer arietinum L. HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Ciclev10028028m.g Citrus clementina HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 74.4
Duzib170G0934 Durio zibethinus HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Gohir.A07G108500 Gossypium hirsutum HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Gohir.D07G112300 Gossypium hirsutum HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Gorai.001G120700 Gossypium raimondii HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Lj3g0007481 Lotus japonicus HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Phvul.005G126100 Phaseolus vulgaris HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
SGA_v2.0_scaffold102G29927 Striga asiatica HOM05D000144 ORTHO05D007336 1.8e-10 68.2 43 76.7
Lsat_1_v5_gn_6_39720 Lactuca sativa HOM05D000144 ORTHO05D007336 2.3e-10 67.8 43 72.1
Lsat_1_v5_gn_8_43261 Lactuca sativa HOM05D000144 ORTHO05D007336 2.3e-10 67.8 43 72.1
Sabra09G0113200 Salix brachista HOM05D000144 ORTHO05D007336 2.3e-10 67.8 43 74.4
Sabra09G0115600 Salix brachista HOM05D000144 ORTHO05D007336 2.3e-10 67.8 43 74.4
Potri.009G146400 Populus trichocarpa HOM05D000144 ORTHO05D007336 3.1e-10 67.4 43 74.4
ATR0820G178 Amborella trichopoda HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 69.8
MSTRG.17716 Avicennia marina HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
COL.COLO4_19942 Corchorus olitorius HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
MELO3C004752.2 Cucumis melo HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
CsaV3_1G014630 Cucumis sativus L. HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
Glyma.12G182700 Glycine max HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
Manes.04G006500 Manihot esculenta HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
Medtr2g085075 Medicago truncatula HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
Psat5g256080 Pisum sativum HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
Thecc.09G288400 Theobroma cacao HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
VMungo1080G0899 Vigna mungo HOM05D000144 ORTHO05D007336 4.0e-10 67.0 43 74.4
CSS0014801 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D007336 5.2e-10 66.6 43 72.1
CANSAT54G2980 Cannabis sativa HOM05D000144 ORTHO05D007336 5.2e-10 66.6 43 74.4
Lalb_Chr14g0374131 Lupinus albus HOM05D000144 ORTHO05D007336 5.2e-10 66.6 43 74.4
PSO384G3065 Papaver somniferum HOM05D000144 ORTHO05D007336 5.2e-10 66.6 43 74.4
ECA233G1240 Erigeron canadensis HOM05D000144 ORTHO05D007336 6.8e-10 66.2 43 72.1
Migut.N02503 Erythranthe guttata HOM05D000144 ORTHO05D007336 6.8e-10 66.2 43 74.4
Glyma.13G318300 Glycine max HOM05D000144 ORTHO05D007336 6.8e-10 66.2 43 74.4
Nitab4.5_0003532g0080 Nicotiana tabacum HOM05D000144 ORTHO05D007336 8.9e-10 65.9 43 72.1
Nitab4.5_0004240g0040 Nicotiana tabacum HOM05D000144 ORTHO05D007336 8.9e-10 65.9 43 72.1
Oeu035545.1 Olea europaea HOM05D000144 ORTHO05D007336 8.9e-10 65.9 43 74.4
TPR.G23395 Trifolium pratense HOM05D000144 ORTHO05D007336 8.9e-10 65.9 43 72.1
Cc01_g09550 Coffea canephora HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
FvH4_3g24280 Fragaria vesca HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
FAN11G0873 Fragaria x ananassa HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
FAN21G0232 Fragaria x ananassa HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
FAN25G0117 Fragaria x ananassa HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
RcHm_v2.0_Chr5g0043591 Rosa chinensis HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
Sed0002834 Sechium edule HOM05D000144 ORTHO05D007336 1.2e-09 65.5 43 72.1
Aqoxy4G02840 Aquilegia oxysepala HOM05D000144 ORTHO05D007336 1.5e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.GZ1FF1 Arachis hypogaea HOM05D000144 ORTHO05D007336 1.5e-09 65.1 43 72.1
arahy.Tifrunner.gnm1.ann1.LG5WAH Arachis hypogaea HOM05D000144 ORTHO05D007336 1.5e-09 65.1 43 72.1
Prupe.6G123000 Prunus persica HOM05D000144 ORTHO05D007336 1.5e-09 65.1 43 69.8
Aqoxy7G01340 Aquilegia oxysepala HOM05D000144 ORTHO05D007336 2.0e-09 64.7 43 69.8
DCAR_006150 Daucus carota HOM05D000144 ORTHO05D007336 2.0e-09 64.7 43 72.1
PGR119G0139 Punica granatum HOM05D000144 ORTHO05D007336 2.0e-09 64.7 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1463 Anthoceros agrestis HOM05D000144 ORTHO05D007336 2.6e-09 64.3 43 67.4
FAN25G0992 Fragaria x ananassa HOM05D000144 ORTHO05D007336 2.6e-09 64.3 43 72.1
HanXRQChr04g0094681 Helianthus annuus HOM05D000144 ORTHO05D007336 2.6e-09 64.3 43 69.8
THA.LOC104799539 Tarenaya hassleriana HOM05D000144 ORTHO05D007336 2.6e-09 64.3 43 69.8
EL10Ac7g15788 Beta vulgaris HOM05D000144 ORTHO05D007336 3.4e-09 63.9 43 69.8
Zm00001eb176200 Zea mays HOM05D000144 ORTHO05D007336 3.4e-09 63.9 43 67.4
ClCG01G012500 Citrullus lanatus HOM05D000144 ORTHO05D007336 4.4e-09 63.5 43 72.1
Lj2C989G2 Lonicera japonica HOM05D000144 ORTHO05D007336 4.4e-09 63.5 43 67.4
SHI00546 Sapria himalayana HOM05D000144 ORTHO05D007336 4.4e-09 63.5 43 72.1
Thhalv10002440m.g Eutrema salsugineum HOM05D000144 ORTHO05D007336 5.8e-09 63.2 43 65.1
Os08g0557500 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D007336 5.8e-09 63.2 41 70.7
Sc21g0004790 Simmondsia chinensis HOM05D000144 ORTHO05D007336 5.8e-09 63.2 43 67.4
MD11G1160100 Malus domestica HOM05D000144 ORTHO05D007336 1.3e-08 62.0 43 65.1
Pp3c9_24450 Physcomitrium patens HOM05D000144 ORTHO05D007336 1.3e-08 62.0 43 65.1
SalBow3G1277 Salvia bowleyana HOM05D000144 ORTHO05D007336 1.3e-08 62.0 43 69.8
Hund20866 Selenicereus undatus HOM05D000144 ORTHO05D007336 1.3e-08 62.0 43 65.1
MD03G1138000 Malus domestica HOM05D000144 ORTHO05D007336 2.2e-08 61.2 43 65.1
AT3G44600 Arabidopsis thaliana HOM05D000144 ORTHO05D007336 2.9e-08 60.8 43 65.1
CARHR151580 Cardamine hirsuta HOM05D000144 ORTHO05D007336 2.9e-08 60.8 43 65.1
Sp5g16610 Schrenkiella parvula HOM05D000144 ORTHO05D007336 2.9e-08 60.8 43 65.1
SMO364G0191 Selaginella moellendorffii HOM05D000144 ORTHO05D007336 2.9e-08 60.8 43 65.1
Aa31LG4G14360 Aethionema arabicum HOM05D000144 ORTHO05D007336 3.7e-08 60.5 43 62.8
Ah.08g215990 Amaranthus hybridus HOM05D000144 ORTHO05D007336 4.9e-08 60.1 43 62.8
AL5G22730 Arabidopsis lyrata HOM05D000144 ORTHO05D007336 4.9e-08 60.1 43 62.8
BcaB01g01158 Brassica carinata HOM05D000144 ORTHO05D007336 4.9e-08 60.1 43 65.1
BcaC01g02060 Brassica carinata HOM05D000144 ORTHO05D007336 6.4e-08 59.7 43 65.1
A06p21820 Brassica napus HOM05D000144 ORTHO05D007336 6.4e-08 59.7 43 65.1
C03p69060 Brassica napus HOM05D000144 ORTHO05D007336 6.4e-08 59.7 43 65.1
BolC3t19161H Brassica oleracea HOM05D000144 ORTHO05D007336 6.4e-08 59.7 43 65.1
BraA06t25273Z Brassica rapa HOM05D000144 ORTHO05D007336 6.4e-08 59.7 43 65.1
CBR_g45485 Chara braunii HOM05D000144 ORTHO05D007336 8.4e-08 59.3 42 66.7
Gohir.A07G108720 Gossypium hirsutum HOM05D000144 ORTHO05D007336 8.4e-08 59.3 36 80.6
Eucgr.J00463 Eucalyptus grandis HOM05D000144 ORTHO05D007336 1.1e-07 58.9 43 67.4
AUR62009798 Chenopodium quinoa HOM05D000144 ORTHO05D007336 1.9e-07 58.2 43 62.8
AUR62039246 Chenopodium quinoa HOM05D000144 ORTHO05D007336 1.9e-07 58.2 43 62.8
Carub.0005s1024 Capsella rubella HOM05D000144 ORTHO05D007336 2.4e-07 57.8 43 60.5
Carub.0015s0019 Capsella rubella HOM05D000144 ORTHO05D007336 2.4e-07 57.8 43 60.5
Mapoly0008s0208 Marchantia polymorpha HOM05D000144 ORTHO05D007336 4.1e-07 57.0 43 60.5
Manes.14G162200 Manihot esculenta HOM05D000144 ORTHO05D007336 9.2e-07 55.8 40 75.0


User provided reference genes

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