Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c25091.3 Carica papaya HOM05D006490 ORTHO05D008301 7.2e-30 133.3 68 100.0
Cpa.g.sc1680.2 Carica papaya HOM05D006490 ORTHO05D008301 3.7e-26 120.9 63 96.8
THA.LOC104814092 Tarenaya hassleriana HOM05D006490 ORTHO05D008301 2.9e-23 111.3 63 87.3
CANSAT56G3458 Cannabis sativa HOM05D006490 ORTHO05D008301 6.5e-23 110.2 62 85.5
COL.COLO4_12627 Corchorus olitorius HOM05D006490 ORTHO05D008301 1.1e-22 109.4 63 84.1
Gohir.A11G084700 Gossypium hirsutum HOM05D006490 ORTHO05D008301 1.5e-22 109.0 63 84.1
Gorai.007G094900 Gossypium raimondii HOM05D006490 ORTHO05D008301 1.5e-22 109.0 63 84.1
Prupe.2G154300 Prunus persica HOM05D006490 ORTHO05D008301 1.9e-22 108.6 63 85.7
CiPaw.01G053400 Carya illinoinensis HOM05D006490 ORTHO05D008301 3.2e-22 107.8 63 82.5
ClCG05G001900 Citrullus lanatus HOM05D006490 ORTHO05D008301 3.2e-22 107.8 64 81.2
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 4.2e-22 107.5 64 82.8
MELO3C006150.2 Cucumis melo HOM05D006490 ORTHO05D008301 4.2e-22 107.5 64 81.2
Atru.chr7.2364 Acer truncatum HOM05D006490 ORTHO05D008301 5.5e-22 107.1 63 82.5
CARHR000480 Cardamine hirsuta HOM05D006490 ORTHO05D008301 5.5e-22 107.1 64 81.2
Thhalv10008101m.g Eutrema salsugineum HOM05D006490 ORTHO05D008301 5.5e-22 107.1 63 81.0
Oeu024418.2 Olea europaea HOM05D006490 ORTHO05D008301 5.5e-22 107.1 64 78.1
Sp1g00430 Schrenkiella parvula HOM05D006490 ORTHO05D008301 5.5e-22 107.1 63 81.0
CsaV3_3G009300 Cucumis sativus L. HOM05D006490 ORTHO05D008301 7.2e-22 106.7 64 79.7
Thecc.01G368800 Theobroma cacao HOM05D006490 ORTHO05D008301 7.2e-22 106.7 63 82.5
Actinidia33445 Actinidia chinensis HOM05D006490 ORTHO05D008301 9.4e-22 106.3 64 79.7
Ciclev10020970m.g Citrus clementina HOM05D006490 ORTHO05D008301 9.4e-22 106.3 63 79.4
Gohir.D11G088800 Gossypium hirsutum HOM05D006490 ORTHO05D008301 9.4e-22 106.3 63 82.5
RcHm_v2.0_Chr1g0352201 Rosa chinensis HOM05D006490 ORTHO05D008301 9.4e-22 106.3 63 84.1
AL1G10470 Arabidopsis lyrata HOM05D006490 ORTHO05D008301 1.2e-21 105.9 64 79.7
AT1G01860 Arabidopsis thaliana HOM05D006490 ORTHO05D008301 1.2e-21 105.9 64 79.7
MSTRG.17232 Avicennia marina HOM05D006490 ORTHO05D008301 1.2e-21 105.9 64 78.1
Dinv43755 Davidia involucrata HOM05D006490 ORTHO05D008301 1.2e-21 105.9 63 82.5
FAN06G1200 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.2e-21 105.9 63 82.5
FAN06G2547 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.2e-21 105.9 63 82.5
FAN10G0695 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.2e-21 105.9 63 82.5
FAN10G3169 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.2e-21 105.9 63 82.5
Cc02_g37220 Coffea canephora HOM05D006490 ORTHO05D008301 2.1e-21 105.1 64 79.7
Migut.B01686 Erythranthe guttata HOM05D006490 ORTHO05D008301 2.7e-21 104.8 64 75.0
MD07G1128700 Malus domestica HOM05D006490 ORTHO05D008301 2.7e-21 104.8 63 81.0
Sc02g0002220 Simmondsia chinensis HOM05D006490 ORTHO05D008301 2.7e-21 104.8 64 81.2
Cfa004180 Carpinus fangiana HOM05D006490 ORTHO05D008301 3.6e-21 104.4 63 79.4
Haze_15229 Corylus avellana HOM05D006490 ORTHO05D008301 3.6e-21 104.4 63 79.4
Glyma.09G264100 Glycine max HOM05D006490 ORTHO05D008301 3.6e-21 104.4 63 79.4
Carub.0001s0036 Capsella rubella HOM05D006490 ORTHO05D008301 4.7e-21 104.0 64 78.1
CAN.G170.51 Capsicum annuum HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 76.2
Lj9A577G54 Lonicera japonica HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 81.0
Phvul.008G070300 Phaseolus vulgaris HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 79.4
Solyc01g091800.3 Solanum lycopersicum HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 76.2
Sopen01g037580 Solanum pennellii HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 76.2
VMungo1383G1476 Vigna mungo HOM05D006490 ORTHO05D008301 4.7e-21 104.0 63 79.4
Lalb_Chr01g0021141 Lupinus albus HOM05D006490 ORTHO05D008301 6.1e-21 103.6 63 79.4
C08p53880 Brassica napus HOM05D002904 ORTHO05D003206 8.0e-21 103.2 63 77.8
BolC8t52902H Brassica oleracea HOM05D002904 ORTHO05D003206 8.0e-21 103.2 63 77.8
BraA09t42265Z Brassica rapa HOM05D002904 ORTHO05D003206 8.0e-21 103.2 63 77.8
AUR62004290 Chenopodium quinoa HOM05D006490 ORTHO05D008301 8.0e-21 103.2 63 81.0
AUR62033365 Chenopodium quinoa HOM05D006490 ORTHO05D008301 8.0e-21 103.2 63 81.0
Duzib138G1247 Durio zibethinus HOM05D006490 ORTHO05D008301 8.0e-21 103.2 63 81.0
Sabra14G0055100 Salix brachista HOM05D006490 ORTHO05D008301 8.0e-21 103.2 63 79.4
arahy.Tifrunner.gnm1.ann1.90SIZ3 Arachis hypogaea HOM05D006490 ORTHO05D008301 1.0e-20 102.8 64 76.6
CSS0016422 Camellia sinensis var. sinensis HOM05D006490 ORTHO05D008301 1.0e-20 102.8 64 76.6
Peaxi162Scf00021g00524 Petunia axillaris HOM05D006490 ORTHO05D008301 1.0e-20 102.8 63 77.8
PGSC0003DMG400017050 Solanum tuberosum HOM05D006490 ORTHO05D008301 1.0e-20 102.8 63 74.6
SGA_v2.0_scaffold153G37067 Striga asiatica HOM05D006490 ORTHO05D008301 1.0e-20 102.8 64 75.0
arahy.Tifrunner.gnm1.ann1.M2DA0A Arachis hypogaea HOM05D006490 ORTHO05D008301 1.4e-20 102.4 64 76.6
Lj1g0027165 Lotus japonicus HOM05D006490 ORTHO05D008301 1.4e-20 102.4 63 76.2
EL10Ac1g00964 Beta vulgaris HOM05D006490 ORTHO05D008301 1.8e-20 102.1 63 81.0
Hund27326 Selenicereus undatus HOM05D006490 ORTHO05D008301 1.8e-20 102.1 63 82.5
DCAR_023894 Daucus carota HOM05D006490 ORTHO05D008301 2.3e-20 101.7 63 79.4
FAN01G0731 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.3e-20 101.7 63 79.4
PSO063G2041 Papaver somniferum HOM05D006490 ORTHO05D008301 2.3e-20 101.7 63 77.8
Eucgr.D02236 Eucalyptus grandis HOM05D006490 ORTHO05D008301 3.0e-20 101.3 63 79.4
Nitab4.5_0004550g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 3.0e-20 101.3 63 74.6
Nitab4.5_0010430g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 4.0e-20 100.9 63 73.0
QL08p050661 Quercus lobata HOM05D006490 ORTHO05D008301 4.0e-20 100.9 64 76.6
Hma1.2p1_0398F.1_g143810 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 6.8e-20 100.1 63 76.2
Potri.014G077100 Populus trichocarpa HOM05D006490 ORTHO05D008301 6.8e-20 100.1 63 77.8
Rhsim01G0155600 Rhododendron simsii HOM05D006490 ORTHO05D008301 6.8e-20 100.1 64 76.6
Sed0027884 Sechium edule HOM05D006490 ORTHO05D008301 6.8e-20 100.1 64 76.6
Ah.05g176030 Amaranthus hybridus HOM05D006490 ORTHO05D008301 8.8e-20 99.8 63 77.8
MBI12_g25032_MAGBIO Magnolia biondii HOM05D006490 ORTHO05D008301 8.8e-20 99.8 63 76.2
TAR003G0001 Trochodendron aralioides HOM05D006490 ORTHO05D008301 8.8e-20 99.8 63 77.8
ATR0757G055 Amborella trichopoda HOM05D006490 ORTHO05D008301 1.2e-19 99.4 63 77.8
PGR031G3648 Punica granatum HOM05D006490 ORTHO05D008301 1.2e-19 99.4 63 76.2
HanXRQChr06g0169021 Helianthus annuus HOM05D006490 ORTHO05D008301 1.5e-19 99.0 63 77.8
TAR656G0005 Trochodendron aralioides HOM05D006490 ORTHO05D008301 1.5e-19 99.0 63 76.2
Aqoxy5G03982 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 2.6e-19 98.2 63 76.2
Lsat_1_v5_gn_7_8340 Lactuca sativa HOM05D006490 ORTHO05D008301 2.6e-19 98.2 64 71.9
SEGI_28096 Sequoiadendron giganteum HOM05D006490 ORTHO05D008301 3.4e-19 97.8 64 75.0
TWI59G0097 Tripterygium wilfordii HOM05D006490 ORTHO05D008301 3.4e-19 97.8 63 73.0
Aqoxy5G04011 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 5.7e-19 97.1 63 74.6
TPR.G37730 Trifolium pratense HOM05D006490 ORTHO05D008301 5.7e-19 97.1 63 76.2
ECA236G2797 Erigeron canadensis HOM05D006490 ORTHO05D008301 7.5e-19 96.7 63 74.6
unitig_26.g9312 Utricularia gibba HOM05D006490 ORTHO05D008301 7.5e-19 96.7 63 73.0
GSVIVG01027529001 Vitis vinifera HOM05D006490 ORTHO05D008301 7.5e-19 96.7 63 73.0
Medtr7g076280 Medicago truncatula HOM05D006490 ORTHO05D008301 2.2e-18 95.1 63 74.6
Psat0s1132g0040 Pisum sativum HOM05D006490 ORTHO05D008301 2.8e-18 94.7 64 73.4
Ca_07866_v3 Cicer arietinum L. HOM05D006490 ORTHO05D008301 1.4e-17 92.4 63 69.8
CDE12G0440 Ceratophyllum demersum HOM05D006490 ORTHO05D008301 1.8e-17 92.0 63 71.4
Os02g0122900 Oryza sativa ssp. japonica HOM05D006490 ORTHO05D008301 5.9e-16 87.0 65 66.2
Zm00001eb208500 Zea mays HOM05D006490 ORTHO05D008301 1.7e-15 85.5 65 64.6
Aqoxy5G03995 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 7.2e-14 80.1 50 76.0
Pp3c10_22230 Physcomitrium patens HOM05D006490 ORTHO05D008301 6.1e-13 77.0 60 60.0
Manes.05G040300 Manihot esculenta HOM05D006490 ORTHO05D008301 5.2e-12 73.9 45 75.6
Mapoly0057s0065 Marchantia polymorpha HOM05D006490 ORTHO05D008301 1.2e-11 72.8 62 54.8
SMO244G0093 Selaginella moellendorffii HOM05D006490 ORTHO05D008301 1.5e-11 72.4 63 54.0
vmacro20973 Vaccinium macrocarpon HOM05D006490 ORTHO05D008301 2.0e-11 72.0 54 68.5
CiPaw.01G023700 Carya illinoinensis HOM05D006490 ORTHO05D008301 2.6e-11 71.6 43 79.1
Prupe.2G159600 Prunus persica HOM05D006490 ORTHO05D008301 2.6e-11 71.6 43 83.7
CBR_g5745 Chara braunii HOM05D006490 ORTHO05D008301 3.4e-11 71.2 63 52.4
FAN03G0539 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.7e-10 68.9 43 79.1
FAN06G3554 Fragaria x ananassa HOM05D000005 ORTHO05D011727 4.1e-09 64.3 57 57.9
TAR375G0598 Trochodendron aralioides HOM05D000196 ORTHO05D000279 2.0e-08 62.0 47 68.1
Cre06.g309300 Chlamydomonas reinhardtii HOM05D006490 ORTHO05D008301 3.3e-06 54.7 51 52.9


User provided reference genes

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